LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan8g0541	ATGTCTAAATCTAATTCTAACCCTAAAAAGAGCAAGGGTCGCCAAAAGGTTGAGATGAAAAAGATGACGAATGAGAGCAACTTACAAGTCACTTTCTCAAAACGACGCACTGGGCTTTTCAAGAAAGCGAGTGAACTTTGCACCCTTTGTGGCGCAGAAGTGGCTCTCATTGTTTTTTCTCCGTCTGATAAAGCTTTCTCTTACGGCCACCCAAATGTCAGTACGGTCATTGATCGTTATATGATGAAACCCCAACCACCGAACTCAGTAGCCATCCAATTTTTAGAGGCTCAACACCGTGCAAAGGAGCGTGAGCTAAACGATCATCTCACCCAGATCAATGCAGATATTGAGATAGAGAAGGTGTGCAATGATGAGATGAACAAGCAGCGAAAAGAAGCACAAGCACAGTTCTGGTGGGCTTCTCCAATTGAGGAGATTAATAATACAACACAACTTCATCAGCTGAAGTTGGCTTTGGAGGATCTCAAGAGTGTGATTCTCCAAGCGCAAAACCAACATGTTTCTCAGGGTCCTACTCTTTCTACTAACCAACATCCACAATTATTCTCAGGTGGTTCCTCAGCTAATAACAACCCACCTTTTATGCTTCATCAACCACCGTGTCCTCCACCGTCACAGTTTTTTCCTTTTCCACCACAACAGCAGTCCTTTGAAGGTGGTTCCTCATCGGAAAACCCTTCTATCATGCATTCCATGATGATGCACCACCCAAGTGGTTTCAACAATATGGGAGGAGGATATGGATTTTCTACTGGATTCTTTTAA	789	0.4347	MSKSNSNPKKSKGRQKVEMKKMTNESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPSDKAFSYGHPNVSTVIDRYMMKPQPPNSVAIQFLEAQHRAKERELNDHLTQINADIEIEKVCNDEMNKQRKEAQAQFWWASPIEEINNTTQLHQLKLALEDLKSVILQAQNQHVSQGPTLSTNQHPQLFSGGSSANNNPPFMLHQPPCPPPSQFFPFPPQQQSFEGGSSSENPSIMHSMMMHHPSGFNNMGGGYGFSTGFF*	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan8g0541	262	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lan8g0541	262	PRINTS	MADS domain signature	14	34	IPR002100	GO:0003677\|GO:0046983
	Lan8g0541	262	PRINTS	MADS domain signature	34	49	IPR002100	GO:0003677\|GO:0046983
	Lan8g0541	262	PRINTS	MADS domain signature	49	70	IPR002100	GO:0003677\|GO:0046983
	Lan8g0541	262	PANTHER	MADS BOX PROTEIN	11	185	-	-
	Lan8g0541	262	Gene3D	-	24	92	IPR036879	GO:0003677\|GO:0046983
	Lan8g0541	262	SUPERFAMILY	SRF-like	13	87	IPR036879	GO:0003677\|GO:0046983
	Lan8g0541	262	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	11	185	-	-
	Lan8g0541	262	Coils	Coil	92	112	-	-
	Lan8g0541	262	CDD	MADS_MEF2_like	13	81	IPR033896	GO:0000977\|GO:0045944
	Lan8g0541	262	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	21	68	IPR002100	GO:0003677\|GO:0046983
	Lan8g0541	262	MobiDBLite	consensus disorder prediction	219	238	-	-
	Lan8g0541	262	SMART	madsneu2	12	71	IPR002100	GO:0003677\|GO:0046983
	Lan8g0541	262	MobiDBLite	consensus disorder prediction	219	237	-	-
	Lan8g0541	262	Coils	Coil	153	173	-	-
	Lan8g0541	262	ProSiteProfiles	MADS-box domain profile.	12	72	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan8g0541	Lan-Chr8	7642829	7643670	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan8g0541	9	167	Type I MADS-box Gene Family	AT5G60440	56.173	1.02e-53	174

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lan8g0541		SRF-TF	1.6e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan8g0541	-		-	lang:109356189	304.679