Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0540 ATGGTTAACTCAGTGTCTAACTCTAACCCTAGGAGGAGCAAGGGTCGCCAAAAGATCGAAATGAAAAAGATGACTAACGAGAGTAACCTTCAAGTCACTTTCTCCAAACGTCGAAGTGGTCTTTTCAAGAAAGCGAGTGAGCTTTGCACCCTTTGTGGTGTAGAAGTTGCTCTCATTGTTTTCTCTCCTGGAGAGAAGGTTTTCTCTTTTGGTCACCCCAATGTTGATACGGTCATCGACCGCTATATGATGAGGGCCCCACCACAGAATTTAGGAACCATGCAGTTCATTGAGGCTCATCGTAGTGCCAATGTTCGCGAACTAAATGCTCAGCTAACTCAGATCAATGCCGATCTTGAGATAGAGAAGAAGTGCAGTGATGAGTTGAACCGATTGCACACTGCTGCTAAAAGCCAATTCTGGTGGGCTGCTCCAATTGATGAGATGAACAACACACAACTTGATCAGTTCAAATTGGCTTTGAAGGAGTTGAAGAAGGGTTTATCTCGTCAAGGTAGTGCTGCTACTCAACCTCCTCAGTTTTTTCCAGGTGCCTCCAATTCTAACAACCCTATGTTGCTTCATCAACCACAATGTCCTCCACAACCTCAAATGTTTCCACTTACAACACAACAGATGCCACACCACCCTTCTATGATGATGTTTGATGGTGGCATGATGCGTTATCCTGGATTCAACAACATTGGAGGGTTTGGACAAAGTGGTGGATTCTTTTGA 738 0.4444 MVNSVSNSNPRRSKGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGVEVALIVFSPGEKVFSFGHPNVDTVIDRYMMRAPPQNLGTMQFIEAHRSANVRELNAQLTQINADLEIEKKCSDELNRLHTAAKSQFWWAAPIDEMNNTQLDQFKLALKELKKGLSRQGSAATQPPQFFPGASNSNNPMLLHQPQCPPQPQMFPLTTQQMPHHPSMMMFDGGMMRYPGFNNIGGFGQSGGFF* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0540 245 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Lan8g0540 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Lan8g0540 245 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Lan8g0540 245 Gene3D - 94 177 - -
Lan8g0540 245 MobiDBLite consensus disorder prediction 1 26 - -
Lan8g0540 245 Gene3D - 26 93 IPR036879 GO:0003677|GO:0046983
Lan8g0540 245 CDD MADS_MEF2_like 15 83 IPR033896 GO:0000977|GO:0045944
Lan8g0540 245 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Lan8g0540 245 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Lan8g0540 245 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Lan8g0540 245 SUPERFAMILY SRF-like 15 88 IPR036879 GO:0003677|GO:0046983
Lan8g0540 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 13 168 - -
Lan8g0540 245 PANTHER MADS BOX PROTEIN 13 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0540 Lan-Chr8 7628633 7629379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0540 11 189 Type I MADS-box Gene Family AT5G60440 55.435 2.11e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan8g0540 SRF-TF 8.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0540 - - lang:109356189 289.271