Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0531 ATGGAGCCTTCTGAAGAATGGAGTTCCCTTAGTGGATTGTACACAGTTGATGAAGCTGATTTTATGAGCCAGTTGCTTGATAACTGCTCAGTCCCGGAGCAGCTCTACGGAAATTTCGATATGGAAATTCCATCTGCATTATGGGATGATCATGAATCAACACTAGCTGGTGTGACAGGCCTTAACAAATGTTCATATTATCCTGAAAAAGTTGCTAATACTAATTTTTTGCATAGTAGTAATAATTTCCCTAGTACAAGTGGTGGCAACTACTACTTCAATGATCCAGTAACCAACACTGGCTATGTTCCTATGGGTTTTTCCTTTGCAGATTCCGAGTTCAGCCCTTATAGTTTTCAAGGGAATGAGAATCAGTGTATAAATGAAAATATTGAAGAGTTTGGTGTAGAGGTTGTTGCTGACCAGAATTTGCAGGCTCGCAAGGAATGTGAAGAAGTACTAGTTTCTGAGCCAGCAGAAGAGGATATAACCTGCAACCTCGAGAATTCGGGGAAAAGATCTAGGAGATCGACCGAGGTCCGGAAGAACAAGAAAAGTGTTAAACCAAAGAAGAAACTAAAATCTGCTTCTATGAGTAACACTGAAGAGGATACTAGTTCTGGTTTTCAGGGTCTGAGCTTGAGTAATTACTGCTCAGAGGATGATTCCAATGCATCTAAAGAGAAAAATGAAGAAGGGTCTTCAAGCTTGAGCTCAAAAGTTTCAAAAGATCTCAAGTCAAATGGCAAACCAAGGTGTAGTAGAGGTTCTGCTACTGATCCACAGAGCATTTATGCAAGAAGAAGAAGAGAAAGGATAAATGGAAGGTTGAAAATCCTACAAACTCTAGTCCCCAATGGAACAAAGGTGGATATCAGCACTATGCTGGAGGAAGCTGTGGAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTAAGTTCTGATGATCTCTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGACTAGACCTCAACCTTAATAAAACAACCATAGGAAATACATAG 1038 0.3979 MEPSEEWSSLSGLYTVDEADFMSQLLDNCSVPEQLYGNFDMEIPSALWDDHESTLAGVTGLNKCSYYPEKVANTNFLHSSNNFPSTSGGNYYFNDPVTNTGYVPMGFSFADSEFSPYSFQGNENQCINENIEEFGVEVVADQNLQARKECEEVLVSEPAEEDITCNLENSGKRSRRSTEVRKNKKSVKPKKKLKSASMSNTEEDTSSGFQGLSLSNYCSEDDSNASKEKNEEGSSSLSSKVSKDLKSNGKPRCSRGSATDPQSIYARRRRERINGRLKILQTLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNLNKTTIGNT* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0531 345 CDD bHLH_AtIND_like 258 320 - -
Lan8g0531 345 MobiDBLite consensus disorder prediction 199 221 - -
Lan8g0531 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Lan8g0531 345 MobiDBLite consensus disorder prediction 230 244 - -
Lan8g0531 345 MobiDBLite consensus disorder prediction 165 267 - -
Lan8g0531 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 338 - -
Lan8g0531 345 Gene3D - 260 320 IPR036638 GO:0046983
Lan8g0531 345 MobiDBLite consensus disorder prediction 177 192 - -
Lan8g0531 345 Pfam Helix-loop-helix DNA-binding domain 267 307 IPR011598 GO:0046983
Lan8g0531 345 PANTHER TRANSCRIPTION FACTOR BHLH54 4 338 - -
Lan8g0531 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 322 IPR036638 GO:0046983
Lan8g0531 345 SMART finulus 263 312 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0531 Lan-Chr8 7544450 7546476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0531 1 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.496 2.17e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0531 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0531 - - ccaj:109795401 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0531 8 7544450 7546476 Lan20g0386 20 2670610 2672420 LSH
Lan8g0531 8 7544450 7546476 Lan4g1514 4 24266869 24268985 LSH