Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0530 ATGGAATCTACTCATCTAATCTCTGAAGAATGGTGTTCTCTTAGTGGACTAAACATAGCTGAAGAAGCTGATTTTATGACTCAGTTGCTTGGTGGAAATTCCACTTTTTGGTCAAGCCATGAATCCACAAACACCAACACCAATTCATATTTTCCATCAAATGTTGAAAATTCTAACTTGTTATATTGCTCCCAAGGGAGTAGCTCCAGTACTGATAATAGTGGAACCTGCTCCTTTGATCCAGCAACAAATTTTGACTCAATGTCCATGGATTTTTTCTCTGGTGATTCCAACTTTAGTCCACATATTTTTCAATGGAATGGCAACTTAAGCCAACAGATAAATGTACTAAACAGTGATGAAGAGCCATGCATAGACCAAGATAAACCAATTCTTAATGACTACAATTTGCATGCAGAAGAGGATAAAATCAGAAACCTGATGAACCATGCTAAAAGATCAAGGAGCTCAATAGAGGAGGTCTCAGAAAACATGAGGCATGCTAAATCAAGGAAGATTCCAAAACCTGCTTCAATGAGTAGTTTCAATGTAGGATTAGCTTCAAATTTTGCCCCTTCATCTAGCAGCTATAATTCAGAAGGTGACTCTAATCCTTCTCTGGAGCTAAATGGAGGTGCATCTCCAAGTCTGAGCCCAAAAGATTCTACACCTAATAGAAAATCAAGATCTAACAGTTGTCTAGCCACTGGTCCACAAACCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAAAACTGCAAAGCCTTGTCCCAAATGGAACTAAGGTGGATATTAGCACCATGCTTGAGGAAGCTGTCATATATGTGAAGTTCTTACAACACCAAATTAAGCTTCTGAGCTCTGATGATCTATGGATGTATGCTTCCATTGCTTGCAATGGAATCAATATTGGACTATAG 933 0.3826 MESTHLISEEWCSLSGLNIAEEADFMTQLLGGNSTFWSSHESTNTNTNSYFPSNVENSNLLYCSQGSSSSTDNSGTCSFDPATNFDSMSMDFFSGDSNFSPHIFQWNGNLSQQINVLNSDEEPCIDQDKPILNDYNLHAEEDKIRNLMNHAKRSRSSIEEVSENMRHAKSRKIPKPASMSSFNVGLASNFAPSSSSYNSEGDSNPSLELNGGASPSLSPKDSTPNRKSRSNSCLATGPQTLYARKRRERINERLRKLQSLVPNGTKVDISTMLEEAVIYVKFLQHQIKLLSSDDLWMYASIACNGINIGL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0530 310 Pfam Helix-loop-helix DNA-binding domain 244 284 IPR011598 GO:0046983
Lan8g0530 310 MobiDBLite consensus disorder prediction 193 246 - -
Lan8g0530 310 MobiDBLite consensus disorder prediction 148 170 - -
Lan8g0530 310 PANTHER TRANSCRIPTION FACTOR BHLH54 24 307 - -
Lan8g0530 310 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 307 - -
Lan8g0530 310 CDD bHLH_AtIND_like 235 297 - -
Lan8g0530 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 240 297 IPR036638 GO:0046983
Lan8g0530 310 MobiDBLite consensus disorder prediction 193 238 - -
Lan8g0530 310 SMART finulus 240 289 IPR011598 GO:0046983
Lan8g0530 310 MobiDBLite consensus disorder prediction 148 178 - -
Lan8g0530 310 Gene3D - 240 292 IPR036638 GO:0046983
Lan8g0530 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0530 Lan-Chr8 7540385 7541819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0530 193 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 63.934 3.13e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0530 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0530 - - gmx:100816788 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0530 8 7540385 7541819 Lan20g0387 20 2675479 2677238 LSH
Lan8g0530 8 7540385 7541819 Lan4g1513 4 24262151 24263680 LSH