Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0523 ATGACGAGTGCTTCGGAGCTATTCCACACCAGAAGGTATCATCGATTCGGAGTTCTTCCAAACGCTGATCTCGATCTAACCTTCCATTCTTCCACTTCTCCAAACCTCCACCACCATCTTCGCCGTCACCATCACCGTTCCGCTCACACCGAGCACGCAGCGGATAGGTTGGTTCACAGGAATCTTCGGCTAGTTGTAGATGATAGCGACGATTCTGCAGAAAATGGGAGAGGCATAAGTGTGAATGTGAGTGACAGACTACCTGTTGAAGTGCTACTTGCAAGGGAAAGACTTCTTGAGAGGTTGAGAGGGGACCCTGTCTCCACCTACAGGCAACATGGTAGAGATTCGATGGTTGGGGATCAAGAAAGCGAAGTATCAAATGATGTTCCGACTAGGGGCTCTCTAGTTACTGACTTGACTTCCCAAATCAGAAGAAGATCTCAGCTGTTGCAAGAACTCGACCGAAAGCCACCTGGACTCACCCAGGAGGACATTAACTCTTTGTATCTGGAAGTTTTTAGCAGCAGGGTAACAGGATCAAAGTCCAGAGTACTGCTGGATTGTAGCATATGCTTGGAGTCTTTCACTGATGGAGATAACCTGATATCTTTGCCATGTAGGCATAAATTTCACTCCACTTGTTTGAATCCTTGGGTTCGCAGTTGTGGAGACTGTCCATACTGTAGAAGAGGTATAGTTGTAAATAGTCACTTACCAAAAGAGAGGTGGGATAGTTTGTACTATATAGGTTGA 756 0.463 MTSASELFHTRRYHRFGVLPNADLDLTFHSSTSPNLHHHLRRHHHRSAHTEHAADRLVHRNLRLVVDDSDDSAENGRGISVNVSDRLPVEVLLARERLLERLRGDPVSTYRQHGRDSMVGDQESEVSNDVPTRGSLVTDLTSQIRRRSQLLQELDRKPPGLTQEDINSLYLEVFSSRVTGSKSRVLLDCSICLESFTDGDNLISLPCRHKFHSTCLNPWVRSCGDCPYCRRGIVVNSHLPKERWDSLYYIG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0523 251 CDD RING-H2_PA-TM-RING 188 230 - -
Lan8g0523 251 SUPERFAMILY RING/U-box 188 238 - -
Lan8g0523 251 SMART ring_2 189 229 IPR001841 -
Lan8g0523 251 MobiDBLite consensus disorder prediction 109 133 - -
Lan8g0523 251 Pfam Ring finger domain 188 230 IPR001841 -
Lan8g0523 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 234 IPR013083 -
Lan8g0523 251 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Lan8g0523 251 PANTHER SI:CH211-59O9.10 1 235 - -
Lan8g0523 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0523 Lan-Chr8 7481705 7484559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0523 64 234 C3H Transcription Factor Family AT1G49850 46.784 8.24e-40 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0523 - - lang:109335003 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0523 8 7481705 7484559 Lan20g0398 20 2768614 2771484 LSH