Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0497 ATGGAGTCAGTGCCTTCTGATGTATCTACTTCACCTCCTGTTAACGAGACCGGAGGACAAGCTTCGTCGGGTGTAGTATCTGGGCAAGATAATTCTGCACATGAGGCACCATCTCGGGTGTCTCCCACTGGCATATCATCTTGGGCTAAAAACTTGAAAGTTCCTCAGCCATTTTCTGGCTCCCAAGATGAACCTTCAAGTGGTAATACCGGGAAATCAGCTTTTTCACGCATTACTAGCAATATAGGGTTGCGGTTGTCTCCGAAATCTCCTCCCGTGGCAGAGGACAGTTCCAGTGAAACAGCAGGGCAATCTAACTTTTTTGGAAGTATTACAAAAGGCCTCGTTGACACTTCTAAGAATGCAGTGAAAGCTGTGCAAGTTAAGGCACGGCATGTTGTTTCTCAGAATAAACGCAGATATCAGGAAGGAGGCTTTGATTTAGATATGACATATATTACAGAAAACATCATTGCTATGGGGTTCCCTGCTGGCGACATGAGCTCTGGGTTTTTTGGATACGTTGAAGGGTTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTTGAGACTCAGCATAAGGATAAATACAAAGTGTACAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTGTTTGAGGGGAAGGTTGCTAGCTTTCCATTTGATGACCATAATTGCCCACCAATTCAACTGATTATATCATTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCGAGGACTGGGTTGATGATTTCTAGTCTTCTGTTATTCTTAAAGTTTTTCCCAACTGCTGAGGAGTCAATGGATTACTACAATCAGAAAAGATGTATTGATGGAAAAGGGCTTGTTCTGCCTAGTCAGATTAGGTATGTTAAATATTTTGAACGGGTCTTGACTTACTTCAATGGCGAAAACCCACCTCCTCGCAGGTGCATGCTTAGGGGATTTCGGCTCCACAGATGCCCTTACTGGATCAGGCCCTCTATAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGAACTTTTGCCAGAAGACTTTTGGTTTAGTGCGCCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTTACAGAGTTGTCTGGGGACTTCAAAATCCATTTTCACGACCGACAAGGAGAATTTTACTGCTGGTTGAACACAACTATGACAGAAAATCGAAAAGTGTTGAACACTAATGATCTTGATGGATTCGACAAGAGGAAATTGCCTTCTCCAGGATTTCTGGTTGAGGTTGTGCTAGTGGATTATAATGGTAATGTTGTAACTTCCAAACTTGATACTGTGACGAAGAACTCGGATGAGAGTTCAAGTAATAATCCTACCACAGTTGAAGCGAGCACCCCTGCGATGAATGTGGACAAAGAATCAGGGAGTACTGATAAAGATGACGTGTTTTCAGATGGTGAGACAGAGCATCCTGCTTCTTCAAGAACCAAGCAAACAAAAGCAGCTTCGGAAGCAGTCGAAACCGTTACAAATGCGACCTCTGGGACTGCGTCCAACAGAGTTTCAAATCAAATCACAAATTTAACACATGCCACAGAACAAATTTCATTGGGGAACAAGAGCTCTACACCAATTCATAGTGCTGGTGAGCCAAAAAGTGATATTGATGGAAGAACAATTTCAGGTCTTGAGGCACCCAGCACAGAAAGTGAGTTTAAAGCCATGGCTGCAGATGCTTCTGTTTTTACATTTGGTGATGATGAAGACTATGAAAGTGATTGA 1836 0.427 MESVPSDVSTSPPVNETGGQASSGVVSGQDNSAHEAPSRVSPTGISSWAKNLKVPQPFSGSQDEPSSGNTGKSAFSRITSNIGLRLSPKSPPVAEDSSSETAGQSNFFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETQHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERVLTYFNGENPPPRRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKELLPEDFWFSAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGEFYCWLNTTMTENRKVLNTNDLDGFDKRKLPSPGFLVEVVLVDYNGNVVTSKLDTVTKNSDESSSNNPTTVEASTPAMNVDKESGSTDKDDVFSDGETEHPASSRTKQTKAASEAVETVTNATSGTASNRVSNQITNLTHATEQISLGNKSSTPIHSAGEPKSDIDGRTISGLEAPSTESEFKAMAADASVFTFGDDEDYESD* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0497 611 MobiDBLite consensus disorder prediction 1 104 - -
Lan8g0497 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Lan8g0497 611 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Lan8g0497 611 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Lan8g0497 611 MobiDBLite consensus disorder prediction 463 490 - -
Lan8g0497 611 MobiDBLite consensus disorder prediction 463 522 - -
Lan8g0497 611 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 10 611 - -
Lan8g0497 611 SMART PTEN_C2_2 323 451 IPR014020 -
Lan8g0497 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 232 292 IPR000387 GO:0016311|GO:0016791
Lan8g0497 611 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 10 611 - -
Lan8g0497 611 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Lan8g0497 611 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
Lan8g0497 611 MobiDBLite consensus disorder prediction 555 577 - -
Lan8g0497 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 152 321 IPR029021 -
Lan8g0497 611 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0497 Lan-Chr8 7228509 7233742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0497 3 611 Protein tyrosine phosphatase (PTP) family AT3G19420 67.152 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0497 K01110 - gmx:100784003 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0497 8 7228509 7233742 Lan4g1486 4 23976086 23981647 LSH
Lan18g0993 18 14997823 15004085 Lan8g0497 8 7228509 7233742 PCT