Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0490 ATGGGGGATCACTTTGTGTTGTTGGTTGATCGGATGCTGACCGAATCCACATTAGAATCTGCACTTCAAAGCAGGAATAGTTTGATGCAGGCTGCATCCTCAGCATTGAATGATATGGAAGTTGATGTCTCCTCGATGAAGAAGGGTCTGCATGGTGCAAAATCTCCAGGGAAATTGGTTGAGTGCAAGATATGCCATGACGAGGATGACGATTTTAATATGGAAACACCCTGCTCCTGTTGTGGAAGTTTGAAGTATGCTCACCGTAAATGTATACAACGGTGGTGTAATGAGAAGGGTGATACCACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTATTTCGATTTGGACATATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGAATTGAACAGTGCTCATGTAGTTAGCATGGTTCCCACCGACCAAAACCTTATCAATTCTAACTATGACGAGTATTCAGCCTCTTCTACAGGAAGTTTGATATGCTGTCGTTCAGTTGCTGTCATTTTCATGGCTCTACTAATCTTAAGGCATACTCTTCCCCTCACAATTAGTGGTAATATGGAGTATTCTTTCCCACTCTTCATGTTGTTATTATTTCGGATTGCGGGTATTGTTTTTCCTATATACTTCATGGTTAGAGCAGTGTCATTAATCCTGCGGCATCGACGACAGCATCGAGACCATCCCAATGATTTGCTTAGTGTATCTGATGATGAAAATGAGGAAGCTTTGCCGCCTCTGCCTCATATCGTACGCGTACTATAA 807 0.4275 MGDHFVLLVDRMLTESTLESALQSRNSLMQAASSALNDMEVDVSSMKKGLHGAKSPGKLVECKICHDEDDDFNMETPCSCCGSLKYAHRKCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFRFGHIPMSFRGNWEISRRELNSAHVVSMVPTDQNLINSNYDEYSASSTGSLICCRSVAVIFMALLILRHTLPLTISGNMEYSFPLFMLLLFRIAGIVFPIYFMVRAVSLILRHRRQHRDHPNDLLSVSDDENEEALPPLPHIVRVL* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0490 268 CDD RING_CH-C4HC3_MARCH 62 108 - -
Lan8g0490 268 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Lan8g0490 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 117 IPR013083 -
Lan8g0490 268 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Lan8g0490 268 SUPERFAMILY RING/U-box 60 112 - -
Lan8g0490 268 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Lan8g0490 268 SMART ringv_2 61 108 IPR011016 GO:0008270
Lan8g0490 268 PANTHER OS01G0121200 PROTEIN 1 257 - -
Lan8g0490 268 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 257 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0490 Lan-Chr8 7163678 7171307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0490 61 108 C3H Transcription Factor Family AT2G37950 43.137 7.16e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0490 - - vun:114190540 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0490 8 7163678 7171307 Lan20g0436 20 3045840 3049587 LSH