Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0480 ATGGGTTTACAAAACCAGCTAAACGACGTGTCGTCTGGTTCGATTCCACTTCTTCTATTAGCCCAAATCGCTATTTACTTCAACTACCTCCGTTCATTTCTCTTTACCCTCTTCCAATCCCTTGGACTCTCCAGATTCCGTACCGATCAGATCGTCCACGACGGCTTCTTCTCCGCCGTCGGATCCGGCCTCGCCGGTCTCATCATCCTCTCCGATCAACTCTCCCTTAACAACCACTTCTTCTACACTTATTCCACCTCCGCCGCTGACGGTCACAACAGCAACAACGACTGCGTCTTCTGCCAGAACACTTTCAACGACGGCGACCAGGTTCGCATGCTTCCCTGCCGCCATGTTTTCCACAGCCGATGCTTCGACGGCTGGCTCCGTCACCTCAACTTCAACTGCCCGCTCTGCCGCTCATCGCTTATCTCTGACGAGCGCGTGGCTCACACGGAGGCTCGTATCGGTCGTGAACTCGTGTCATGGTTCTCCATGCGGTGA 504 0.5417 MGLQNQLNDVSSGSIPLLLLAQIAIYFNYLRSFLFTLFQSLGLSRFRTDQIVHDGFFSAVGSGLAGLIILSDQLSLNNHFFYTYSTSAADGHNSNNDCVFCQNTFNDGDQVRMLPCRHVFHSRCFDGWLRHLNFNCPLCRSSLISDERVAHTEARIGRELVSWFSMR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0480 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 149 IPR013083 -
Lan8g0480 167 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Lan8g0480 167 SUPERFAMILY RING/U-box 92 146 - -
Lan8g0480 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Lan8g0480 167 Pfam Ring finger domain 96 140 IPR001841 -
Lan8g0480 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 165 - -
Lan8g0480 167 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0480 Lan-Chr8 7083528 7100615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0480 1 166 C3H Transcription Factor Family AT1G15100 46.988 3.42e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0480 K16282 - gmx:100803789 240.736