Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0461 ATGAGACCAGAAGGGAACCCGTTAGACCTTAATAATTTGCCTGATGAATACTCTAGTAGAGATGGCAAACAAGTCCTCGAAGAAAGCTCCTCACCAAGTTATAGGAAAAAGAAAAATGGCGGGAGGGAAGGAAAAGAGGAGTGTGGGAAAGTGTATGAATGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACAGAGACGCTGAACCATGCTCGTCAACTTGTCTTCCGCACCGATCACACCCTTGCTGCACAAGCTGCTCCTCACCTAGGATGCTGTCAACCAATAGGAGCAGGTGGTGCAGGAGGTTATCACCCATCAGGCAACATGGGAGACCCAACAATTCCACCACCTCTAAGATTCCCAAGATACTTCACTGCTTCATCATCCTCATCACACATTCCACCACCACCACCACAACCACCATATCTCTACGCTTCACCTTCACGCCCACCAGTGCCTTTTACCTCACACTTCCCTCCACATAACGATTACTATGTTGGTCATGTCATGAACCCCACCCACCACAGCTATATCAATGTGGCAGGTTCAGGAGGAGGGGAATCTGGTGGTAGTTACACTTGTATTGGTGCACCGGTGGCACAATCGTTCAGCGGTGGTGGTAAGGACGGAACAGTGCAGAATCAGCAGGAAGAGTTGAATTGGGGAAGGAGCTATTCAGGTGGTGCTGATGCTTCAGCAATCAATCGGTTTCATGATGGTTTCTAA 774 0.4897 MRPEGNPLDLNNLPDEYSSRDGKQVLEESSSPSYRKKKNGGREGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRTDHTLAAQAAPHLGCCQPIGAGGAGGYHPSGNMGDPTIPPPLRFPRYFTASSSSSHIPPPPPQPPYLYASPSRPPVPFTSHFPPHNDYYVGHVMNPTHHSYINVAGSGGGESGGSYTCIGAPVAQSFSGGGKDGTVQNQQEELNWGRSYSGGADASAINRFHDGF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0461 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Lan8g0461 257 MobiDBLite consensus disorder prediction 30 45 - -
Lan8g0461 257 Gene3D Classic Zinc Finger 28 104 - -
Lan8g0461 257 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Lan8g0461 257 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lan8g0461 257 MobiDBLite consensus disorder prediction 1 45 - -
Lan8g0461 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 228 IPR045320 GO:0003700
Lan8g0461 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 228 IPR031113 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0461 Lan-Chr8 6870873 6873643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0461 4 216 C2H2 Transcription Factor Family AT1G13400 45.581 6.80e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g0461 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0461 - - aprc:113871902 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0461 8 6870873 6873643 Lan20g0461 20 3309957 3312392 LSH