Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0457 ATGAGTTCTACAAGTACTAAGAATGTGCCAAACCCGGTTAATGGGAAAACCGCACGAGCGTGTGATAACTGCATAACAAAGAGGGCACGTTGGTATTGTGCTGCTGATGATGCTTTTTTGTGTCAAGCTTGTGACTCTTCTGTTCACTCAGCTAATCCATTGGCTCGGAGACATGAAAGACTCCGTTTGAATACGGCGTCATTCAAATCCTCCAATGAACTCAATAACTATGCTCCTCCTTCTTGGCACCACAAGAAGGCTCGAACACCAAGACATGGGAATCAACACTCTAAGCACTCGAGTAAAAATATTAACAACTCATTCCATCTCGTTCCTGAAGTTGGATCTGATGAGGTGAATTACAATGATGAGAATGAGGAGCAGCTTCTTTTTAGGGTTCCTATATTTGAACCTTTATGCAGTACTCCTTCTTCTATCACTTCGCATGAAATTGTTGAAAAAAGCAAGGTTCCATGGGATTATAATGTTAATTACCATGAAGGGGTGGAAAGCTTGCATGGTGGTTTTGTTCCATCTGATATTGAACTCTATGATTTTGCTGCTGATGTTGAAAGCTTGTTAGGTCAGGGACTAGAAAATGAGTGCATAGGGATGGAAGAGTTGGGGCTGGTTGATATAAAAGAAGAGTCGTTGGAGTGTTCTGTGGGTAGTGGAGGAAAGAAGGTGATGTTTGACGAGGAAGCGAGTCATGAAATGGAAAATAAGATGATGATGATAGAGATGGAAAGAGAATCTTTTGAATTTAGCTATGATTATGGTTCTCATGAAAAGGTGAAGGAGAAACTAGATTTGGATGTGGTGAAAGATGTGGAGGATGGTGGAGAAGTGAAAGAAAATGATGAGGGAAAGAGGAAGAAGATATTATTGCAGCTAGATTATGAAGGAGTAATCAGTGCCTGGGATAGCCAAAAGTGTCCTTGGACTACTGGTGACAAGCCAAATTTGGATCCTGATGAGTGCTGGCCTCAATGCATGGGAACTTGTGGAAAGGAGCTTCATTATCCTCATGGTAGATTTGGGTGCAATCCAGTTGTGGCAGACGGTGGTAGAGAGGCAAGAGTATCAAGGTACAGAGAAAAGCGCCGAACAAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAAAGACCCAGAATGAAAGGTAGGTTTGTGAAGAGGGCCTCCTTTGTGGCACCGACATTTCCCCATTGCTGA 1233 0.4242 MSSTSTKNVPNPVNGKTARACDNCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERLRLNTASFKSSNELNNYAPPSWHHKKARTPRHGNQHSKHSSKNINNSFHLVPEVGSDEVNYNDENEEQLLFRVPIFEPLCSTPSSITSHEIVEKSKVPWDYNVNYHEGVESLHGGFVPSDIELYDFAADVESLLGQGLENECIGMEELGLVDIKEESLECSVGSGGKKVMFDEEASHEMENKMMMIEMERESFEFSYDYGSHEKVKEKLDLDVVKDVEDGGEVKENDEGKRKKILLQLDYEGVISAWDSQKCPWTTGDKPNLDPDECWPQCMGTCGKELHYPHGRFGCNPVVADGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFVAPTFPHC* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0457 410 CDD Bbox1_BBX-like 20 63 - -
Lan8g0457 410 ProSiteProfiles CCT domain profile. 357 399 IPR010402 GO:0005515
Lan8g0457 410 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 405 - -
Lan8g0457 410 MobiDBLite consensus disorder prediction 72 103 - -
Lan8g0457 410 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Lan8g0457 410 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Lan8g0457 410 SMART bboxneu5 16 63 IPR000315 GO:0008270
Lan8g0457 410 Pfam CCT motif 357 399 IPR010402 GO:0005515
Lan8g0457 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 405 - -
Lan8g0457 410 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0457 Lan-Chr8 6799647 6801832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0457 7 399 C2C2-CO-like Transcription Factor Family AT1G25440 46.988 1.06e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan8g0457 CCT 1.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0457 - - vun:114190512 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0457 8 6799647 6801832 Lan20g0468 20 3378081 3380253 LSH