Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0455 ATGTCTAAGCCTCGAAAACAAACGGCAAATAGACAGAAACAAAGGACACATACCTTTCAAGAGCCCAAGATTATGAGAAAACTTAGGATAATTTTCAACGACCCTGATGCTACTGATTCATCTGATGATGAATTTGAGCCTAGAAAAATCAAAAGATGCATTCGTGAAGTACCACTTCCTCTTACTTCAGCCACCGACTCTACCACCACATTTACTGAAACAACAATCTCTTGTGATGAAAGAAACAAAAGTGTTGGTGGGGTTTTGAGCAAGTCTTGCATTGAAGGTCAACAACAACCCCAAACCAATAAAAGGAAAAGGGTTTTGAAACAAAACCCTTCAAGTAAGTTACTACCTATTGGAAAATATAGAGGAGTGAGGCAAAGAAAATGGGGTAAATGGGCTGCAGAAATCCGTGACCCGTTTAGAAGTACCCGTCTTTGGTTAGGTACTTACAATACAGCTGAAGAAGCTTCACAGGCCTATGAGAACAAAAGGCTTGAATTTGAAGCTATGGCAAAGGCTCAATCTTGCAACAATGGTTGTTATTCTTCTGCTTCTTCTGTTGTAGTACCTAAGCCTGCAGCTACTACTGCTACAGATAAGAGTAACTACACTGCAGTGGAATCTGTATCAGAGAAATCTTCTAGTTCTACTACTATGGAAGATTCTGAGAGCATGTTGTCACATACATCACCATCTTCTGTGCTTGACTTGGATACTTCAGGTTCTAATTTGATTGACAAGGGTAATGTTTCATGCAATGAAGCTGTTGAGGCTTGTGATTTTGTGGCTGAGTTAGCTGAACTGGAGATACCAGATTTGAGCACTTTGAACTTGCCTCCTCTTTCAACATATAATGCTGCTGAATCTGGTGCTGATTCTGAGCCAAACCATGGGCTTGATTTTGATTTGTTGCAATTTGATTATGCAAATGGCTTTAATGATTTTGGTGGCTTGGAAGATTTCCATATCTTTGGATTTGATGATAAGGAACCTAGTGTGCTTCCTGATTTTGATTTTGGTGATTTCATTGCTGATGAATTTGCTGGTTGGATTGAGGATCCTCTCAATGCAACTTTCGTCTAA 1089 0.3958 MSKPRKQTANRQKQRTHTFQEPKIMRKLRIIFNDPDATDSSDDEFEPRKIKRCIREVPLPLTSATDSTTTFTETTISCDERNKSVGGVLSKSCIEGQQQPQTNKRKRVLKQNPSSKLLPIGKYRGVRQRKWGKWAAEIRDPFRSTRLWLGTYNTAEEASQAYENKRLEFEAMAKAQSCNNGCYSSASSVVVPKPAATTATDKSNYTAVESVSEKSSSSTTMEDSESMLSHTSPSSVLDLDTSGSNLIDKGNVSCNEAVEACDFVAELAELEIPDLSTLNLPPLSTYNAAESGADSEPNHGLDFDLLQFDYANGFNDFGGLEDFHIFGFDDKEPSVLPDFDFGDFIADEFAGWIEDPLNATFV* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0455 362 Gene3D AP2/ERF domain 122 178 IPR036955 GO:0003700|GO:0006355
Lan8g0455 362 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Lan8g0455 362 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Lan8g0455 362 MobiDBLite consensus disorder prediction 196 236 - -
Lan8g0455 362 SMART rav1_2 122 176 IPR001471 GO:0003700|GO:0006355
Lan8g0455 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 359 - -
Lan8g0455 362 ProSiteProfiles AP2/ERF domain profile. 122 181 IPR001471 GO:0003700|GO:0006355
Lan8g0455 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 9 359 - -
Lan8g0455 362 SUPERFAMILY DNA-binding domain 122 169 IPR016177 GO:0003677
Lan8g0455 362 MobiDBLite consensus disorder prediction 1 22 - -
Lan8g0455 362 CDD AP2 122 162 IPR001471 GO:0003700|GO:0006355
Lan8g0455 362 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0455 Lan-Chr8 6747992 6750315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0455 20 358 AP2-EREBP Transcription Factor Family AT1G68550 33.424 1.38e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan8g0455 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0455 - - lang:109336607 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0455 8 6747992 6750315 Lan20g0470 20 3414440 3416960 LSH
Lan8g0455 8 6747992 6750315 Lan4g1431 4 23359013 23360939 LSH