Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0452 ATGAAGGTTTTTGTCAAGACTTTAAAAGGCACTCACTTCGAAATTGAAGTCAAGCCCGAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTCCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGCTACAACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGACTACATCTGGTGAAGGATCTGCTACTTCAACTACACCCTCAGTGAAGACCCCACAAACAACTGCAGCTCCTACTTCAACCCTCCCAGTGTCAGTAGCACCTCAAGCTCCTGCTGCAACTGTAGCACCGGAAGGGTCTGATGTCTATGGGCAGGCAGCATCAAATCTGGTTGCTGGAACCAACTTGGAGGAAATTATTCAGCACATCCTTGATATGGGTGGTGGGAGCTGGAATAGGGATACTGTCCAACGTGCTCTTCGAGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATATCTCTATTCAGGTATCCCTGAGCAAGCTGAAGCACCCATTGTGGCCCCAGTGCCTGCAAGCGAACAACCTGCTAATCCTACAGCTGCTGCTTCACAAACAACACAACCAGCTCCTGTTACCTCAGGTGGACCTAATGCTCTACCTTTAGACCTCTTTCCCCAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTAGTGCTGGCTCTTTAGATTTTCTACGCAATAGTCAACAGTTCCAAGCCCTGCGAGCTATGGTGCAGGCTAATCCACAAATATTACAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCTGACTTCCTTCGCCTTATAAATGAACCTGTGGAAGGTGGTGAAGGGAATTTATTGGGGCAGCTGGCTGGTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACCGTGTTGGAGGTTTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCTAACTACCTTTTAGATCACATGCATGAGTTTGATGAACAATAG 1119 0.4602 MKVFVKTLKGTHFEIEVKPEDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKTTSGEGSATSTTPSVKTPQTTAAPTSTLPVSVAPQAPAATVAPEGSDVYGQAASNLVAGTNLEEIIQHILDMGGGSWNRDTVQRALRAAYNNPERAVEYLYSGIPEQAEAPIVAPVPASEQPANPTAAASQTTQPAPVTSGGPNALPLDLFPQGLPNVGSGAASAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNLLGQLAGGMPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0452 372 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Lan8g0452 372 SMART CBM 244 287 IPR006636 -
Lan8g0452 372 SUPERFAMILY XPC-binding domain 243 308 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan8g0452 372 SUPERFAMILY UBA-like 138 188 IPR009060 GO:0005515
Lan8g0452 372 SMART uba_6 140 180 IPR015940 -
Lan8g0452 372 SMART uba_6 327 364 IPR015940 -
Lan8g0452 372 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lan8g0452 372 MobiDBLite consensus disorder prediction 201 218 - -
Lan8g0452 372 Pfam XPC-binding domain 246 301 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lan8g0452 372 Gene3D - 133 183 - -
Lan8g0452 372 PRINTS DNA repair protein Rad23 signature 272 294 IPR004806 GO:0006289
Lan8g0452 372 PRINTS DNA repair protein Rad23 signature 321 337 IPR004806 GO:0006289
Lan8g0452 372 PRINTS DNA repair protein Rad23 signature 338 352 IPR004806 GO:0006289
Lan8g0452 372 PRINTS DNA repair protein Rad23 signature 353 368 IPR004806 GO:0006289
Lan8g0452 372 Gene3D - 319 366 - -
Lan8g0452 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 324 365 IPR015940 -
Lan8g0452 372 MobiDBLite consensus disorder prediction 80 106 - -
Lan8g0452 372 SUPERFAMILY UBA-like 308 370 IPR009060 GO:0005515
Lan8g0452 372 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lan8g0452 372 MobiDBLite consensus disorder prediction 195 221 - -
Lan8g0452 372 Pfam UBA/TS-N domain 140 178 IPR015940 -
Lan8g0452 372 Pfam UBA/TS-N domain 327 362 IPR015940 -
Lan8g0452 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 138 181 IPR015940 -
Lan8g0452 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 121 - -
Lan8g0452 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 120 371 - -
Lan8g0452 372 Gene3D - 1 80 - -
Lan8g0452 372 TIGRFAM rad23: UV excision repair protein Rad23 1 370 IPR004806 GO:0006289
Lan8g0452 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23 120 371 - -
Lan8g0452 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 121 - -
Lan8g0452 372 SMART ubq_7 1 75 IPR000626 GO:0005515
Lan8g0452 372 Gene3D - 237 302 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan8g0452 372 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0452 Lan-Chr8 6701425 6705656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0452 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 1.49e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0452 K10839 - gmx:100814162 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0452 8 6701425 6705656 Lan20g0473 20 3457500 3461235 LSH