Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0446 ATGGCTGCGAAGGAAAAGAATCGAATATTTGTTGGAGGTTTGTCTCCGGACGTTACGGAGCGTGAACTTGAGCATGCTTTTAATCGTTACGGCAAAATTCTTGAATGCCAGATCATGATGGAAAGAGATACAGGCCGACGCCGTGGATTTGGGTTCATTACATTTGAAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACAGGAAATTGATGATCACATCATTTCAGTCAACAAGGCCAAGCCCAGGCCCAATCCCAGGCCCAAGATGGGAGGTGATGACTATGCTGACCAAGGTTACAGTGCTACTAGGGTAGGCTATGGGCGTGGAGATAGGGTGGGACAGGATGACTGCTTCAAATGTGGGCGGAAAGGGCATTCGGCCCGAGATTGTCCTAGGTTTCGAGGTGAACGTGATCAATATGCTGATGATCGACGTTATGGAGATAGCTATCACTATATGAGTCACAGGTATCCAACTAATGGTGATCGGTTTGCAAGTGATTGGTATGGTGGTGGTGGCTCAGATTACCGGTATGGCACAGAAAGAGGCTATGACTGGTACAATGGTCCACGAGGAGGTGCTGGTAGGTATGGAAGTGAAATGGCAGGTCGAGATGAAGGAAGGAATTACAGGGGAAGGCCTGGTCCATATGACCGCCCAAGCTGGGGTGGTGGTCGTCCATCTTCATTTGGTCGCTATTGA 714 0.4902 MAAKEKNRIFVGGLSPDVTERELEHAFNRYGKILECQIMMERDTGRRRGFGFITFEDRRGMEDAIKEMHGQEIDDHIISVNKAKPRPNPRPKMGGDDYADQGYSATRVGYGRGDRVGQDDCFKCGRKGHSARDCPRFRGERDQYADDRRYGDSYHYMSHRYPTNGDRFASDWYGGGGSDYRYGTERGYDWYNGPRGGAGRYGSEMAGRDEGRNYRGRPGPYDRPSWGGGRPSSFGRY* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0446 237 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 141 - -
Lan8g0446 237 SUPERFAMILY Retrovirus zinc finger-like domains 105 143 IPR036875 GO:0003676|GO:0008270
Lan8g0446 237 Gene3D - 2 101 IPR012677 -
Lan8g0446 237 Gene3D - 102 145 - -
Lan8g0446 237 SMART rrm1_1 8 81 IPR000504 GO:0003723
Lan8g0446 237 SUPERFAMILY RNA-binding domain, RBD 5 111 IPR035979 GO:0003676
Lan8g0446 237 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Lan8g0446 237 MobiDBLite consensus disorder prediction 81 101 - -
Lan8g0446 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lan8g0446 237 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Lan8g0446 237 MobiDBLite consensus disorder prediction 193 237 - -
Lan8g0446 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lan8g0446 237 PANTHER TRANSFORMER-2-RELATED 1 141 - -
Lan8g0446 237 Pfam Zinc knuckle 121 135 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0446 Lan-Chr8 6670574 6672290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0446 9 87 C2H2 Transcription Factor Family AT2G19380 39.241 1.77e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0446 - - lang:109354389 511.916