Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0444 ATGATTTTTGTTTTCTCTTGTAGGAAAGTCAATGCATCACTATCCAGAAGAGAACTCCAGGACCAAGCTTGCCAAACTGGAAACCCAATTGACGACTGCTGGCGGTGCGACCCAGACTGGGCCGCAAACCGCCAGCGTCTCGCTGAATGCGGACTCGGCTTTGGCCGAGACGCATTAGGCGGAAAAGGTGGTCAGATTTACGTAGTAACAGATTCATCAGACTCTGACCCATCGAACCCAACCCCAGGCACGCTTCGCTACGCTGTAATCCAAGACGTTCCCTTATGGATCGTGTTCTCAGCCGACATGGTAATCAATCTCAAACACGAGCTCATCTTCAACAGCTACAAAACCGTTGATGGCCGTGGCGCAAACGTGCACGTGACGGGAAACGGTTGCATAACCCTACAACTCATCACAAACGTTATTATCCACAACATACACGTGCATGATTGCAAACCTTCAGGGAACACTAAAATACGGTCAAGTCCAACGCAAGTTGTGTCTCGTGGTGAATCAGACGGTGATGGCATAACAATTTCTAGTGCTCAGAAGATATGGATCGATCATTGCTCACTGTCTTCTTGTACAGATGGTTTGATCGATGTGATAAAGGGTTCAACAGGGATAACAATTTCTAATAGCCACTTTACAAAACACGATAAGGTGATGCTGTTAGGGCATGATGATGGGTACATGGATGATAAGGGAATGCAGGTAACTGTTGCATTCAACCATTTCGGAGAAGGTTTGGTTCAGAGAATGCCGAGGGGTAGACATGGATATATACACGTCGTGAATAATGATTACACCAAGTGGGAAATGTATGCTATCGGTGGTAGCGCTGGTCCAACCTTTAACAGCCAGGGTAACCGTTACACTGCTTCCTCAGATCCTAATGCCAAAGAGGTGACAAAGCGAGTGGACACAAAAGAGAGTGTGTGGAGTGCATGGAATTGGAAGACAGAGGGGGACATAATGGTAAATGGAGCATTCTTTGTCCCTTCAGGTTCAGGGGATAATGCTGAGTACGCAGAAGCCACTAGTGTACAAGCTAAATCCGCTTCTCAAATTGACCAACTCACCATGTATTCTGGTGTCTTTGGTGATGTCAGGGATAATGGAGGTTCAAATCCCGGCTCCGACGGAGGTGAGACCATGACCGGATCGACCAATGGCAACGATGCGACTGGGTCCGGCAGCGGTGGCAATGGGAACTTCAGGATGATATACGGTGGTGGTAGCAGCCAAGCAGCACCACCATCACCCACCTCATTAATTGTCCTTGTTTCAACTTTTTTGTATCTTTTAATTATTTTCATTTTGGACACTAGGACCAACCATGTTATTCTATTATCATTACTATGA 1368 0.4664 MIFVFSCRKVNASLSRRELQDQACQTGNPIDDCWRCDPDWAANRQRLAECGLGFGRDALGGKGGQIYVVTDSSDSDPSNPTPGTLRYAVIQDVPLWIVFSADMVINLKHELIFNSYKTVDGRGANVHVTGNGCITLQLITNVIIHNIHVHDCKPSGNTKIRSSPTQVVSRGESDGDGITISSAQKIWIDHCSLSSCTDGLIDVIKGSTGITISNSHFTKHDKVMLLGHDDGYMDDKGMQVTVAFNHFGEGLVQRMPRGRHGYIHVVNNDYTKWEMYAIGGSAGPTFNSQGNRYTASSDPNAKEVTKRVDTKESVWSAWNWKTEGDIMVNGAFFVPSGSGDNAEYAEATSVQAKSASQIDQLTMYSGVFGDVRDNGGSNPGSDGGETMTGSTNGNDATGSGSGGNGNFRMIYGGGSSQAAPPSPTSLIVLVSTFLYLLIIFILDTRTNHVILLSLL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0444 455 Gene3D - 27 369 IPR012334 -
Lan8g0444 455 PANTHER PECTATE LYASE 18-RELATED 14 389 IPR045032 GO:0030570
Lan8g0444 455 PANTHER PECTATE LYASE 14 389 - -
Lan8g0444 455 Pfam Pectate lyase 110 279 IPR002022 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 50 67 IPR018082 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 74 99 IPR018082 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 110 126 IPR018082 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 174 195 IPR018082 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Lan8g0444 455 PRINTS Pollen allergen Amb family signature 347 370 IPR018082 -
Lan8g0444 455 MobiDBLite consensus disorder prediction 372 401 - -
Lan8g0444 455 SUPERFAMILY Pectin lyase-like 28 341 IPR011050 -
Lan8g0444 455 SMART amb_all 102 299 IPR002022 -
Lan8g0444 455 MobiDBLite consensus disorder prediction 379 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0444 Lan-Chr8 6646628 6649348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0444 8 376 Polysaccharide Lyase AT3G54920 64.583 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0444 K01728 - gmx:100808438 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0444 8 6646628 6649348 Lan20g0485 20 3547336 3553941 LSH
Lan8g0444 8 6646628 6649348 Lan4g1413 4 23182374 23188119 LSH