Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0436 ATGATGGCCCTAACATCAATTTGTTGCGCAACAACCAAATTAAATAGGTTTAAATGGCGGGAATTAGGAGACTTGTTGAGAATTGAGAAGCAAGGAATGAGAAGAATGGGATCTGAAGCAGTTGTCGTTGCTGTTCCAGAATGGGCATCAAAGCCTTGCATCATGGGCATCGACGAAGCCGGAAGAGGCCCTGTATTAGGACCAATGGTTTATGGTTGTTTGTACTGTGCTCGCTCCTACCAGAAGACCCTCGCCACTTTGAGTTTTGCAGACTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGAAGCATTGAAGGAAAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAACTCTCCGCTAAAATGCTTAAGAAGAATAAGATAAACTTGAATGAAATATCACATGACTCTGCCATGGGTCTCATTGATAGGGTACTGAAAATGGGAGTGCTTCTAACCGAGGTTTATATAGATACAGTTGGAGATCCGGGGAAATATGAAGCGAAGCTGTCTAAGGTTTTTCCATCTATTAAATGTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACTAGAGACCGAGCTGTAAGAGAATGGGTGTTTGATGAGACTGCTGAAAATATGCTCAGGAACTTTGGCTCTGGATATCCTGCAGATCCCCAAACCAAGTCTTGGCTAGAAGGTCACAAACATTCTATCTTTGGATTTCCAAGTTTGGTCCGATTTAGTTGGGGAACATGCACCACTTATTTTAAAGATGGCGTGGATGTGTTATGGGAGTCTGACAAAGATGAAGATGGTGGTAGCAATAATCAAAATGGCAAACGACAATTGAAATTAAGCAATGTGGGTTTCGCAACATCCAAAAAGAGAAGTGAAGAAATAGAGTCCAGTGGTAAAGGACGCAGTCGGTTTTTCCAGGCTCGGAAACTTGAGCACCTTCCTTATTTCTAA 1008 0.4216 MMALTSICCATTKLNRFKWRELGDLLRIEKQGMRRMGSEAVVVAVPEWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLATLSFADSKTLKEEKREELFEALKENDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYIDTVGDPGKYEAKLSKVFPSIKCVVAKKADSLYPVVSGASIVAKVTRDRAVREWVFDETAENMLRNFGSGYPADPQTKSWLEGHKHSIFGFPSLVRFSWGTCTTYFKDGVDVLWESDKDEDGGSNNQNGKRQLKLSNVGFATSKKRSEEIESSGKGRSRFFQARKLEHLPYF* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0436 335 PANTHER RIBONUCLEASE H2 SUBUNIT A 39 332 IPR001352 GO:0003723|GO:0004523
Lan8g0436 335 TIGRFAM TIGR00729: ribonuclease HII 54 267 IPR004649 GO:0004523|GO:0016070
Lan8g0436 335 PANTHER RIBONUCLEASE 39 332 - -
Lan8g0436 335 SUPERFAMILY Ribonuclease H-like 53 269 IPR012337 -
Lan8g0436 335 Pfam Ribonuclease HII 55 265 IPR024567 GO:0004523
Lan8g0436 335 CDD RNase_HII_eukaryota_like 55 271 - -
Lan8g0436 335 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 52 274 IPR024567 GO:0004523
Lan8g0436 335 Gene3D - 26 224 IPR036397 GO:0003676
Lan8g0436 335 Gene3D Ribonuclease hii. Domain 2 225 272 IPR023160 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0436 Lan-Chr8 6545678 6549479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0436 45 335 Core DNA Replication Machinery Family AT2G25100 68.041 1.13e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0436 K10743 - gmx:100779875 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0436 8 6545678 6549479 Lan20g0492 20 3638233 3641394 LSH