Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0422 ATGTGTGGCGGTGCTATCATCGCTGACTTTATCCCTCACCGCGTTAACCGCCGCATCACCGCTTCTGAGATCTGGCCTAACTCATTCGGCGCCAACCAGAATGACTTCGACTTAGATTCCTCTCAGCAACAATCAACCACCGTCAAACGAACCCAACCTTCCCCAGTTGTTACTGAACAAGTTGAGAAGCCTGTGAAGAGACAGAGGAAGAACCTTTATAGAGGAATTCGGCTACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCAAGAAAAGGGGTTCGTGTTTGGCTTGGAACATTCAATACTGCTGAAGAAGCTGCTAGAGCCTACGACAAAGAGGCTCGAAAAATCCGTGGCAAAAAAGCCAAGCTCAATTTTCCTAATGAGGATGATGAATATTCAATTCAACTTCGTCCTAATCCTCCACGCCTTCCACCGACCCAACCCAAAAAGACTCCATTGTTTCTGCAAGAACCACGCCATTGTGATAGTTTGAATAATGCCCCTATTAAAAATCTGAACTGGGAGTTCGGTTATGATCTGAACCAAGCTGGGGAAATTCCTTCTCATCATGTTACCGACCCCGTTATTATTTCAGGTGATGAAAATTCTGGGTCTGCGGGATCAGAAGGTGCTTATTCAATAACGGTGAATGAGAGTGGCTGTTTCAGTGGAGAGGTGAATGTGAAAGAGGTTTCAGAAGTGAAGGATGCAATGAATGAAGGTCAAGGGTTAAAGGATGAAGTGCTGAAGATTACAGATGAGTTGATATCTTATGAGAACTACATGAAGTTTTTTGAGATTCCTTACTATGTTGACCAATCAACGGAGCCAAATAATGTTCATGAAAACTTGGTTGGGGATCTTTGGAGCTTTGATTAA 888 0.4403 MCGGAIIADFIPHRVNRRITASEIWPNSFGANQNDFDLDSSQQQSTTVKRTQPSPVVTEQVEKPVKRQRKNLYRGIRLRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKLNFPNEDDEYSIQLRPNPPRLPPTQPKKTPLFLQEPRHCDSLNNAPIKNLNWEFGYDLNQAGEIPSHHVTDPVIISGDENSGSAGSEGAYSITVNESGCFSGEVNVKEVSEVKDAMNEGQGLKDEVLKITDELISYENYMKFFEIPYYVDQSTEPNNVHENLVGDLWSFD* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0422 295 MobiDBLite consensus disorder prediction 32 58 - -
Lan8g0422 295 SMART rav1_2 72 135 IPR001471 GO:0003700|GO:0006355
Lan8g0422 295 MobiDBLite consensus disorder prediction 32 63 - -
Lan8g0422 295 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Lan8g0422 295 PANTHER EREBP TRANSCRIPTION FACTOR 1 239 - -
Lan8g0422 295 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700|GO:0006355
Lan8g0422 295 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Lan8g0422 295 CDD AP2 73 130 IPR001471 GO:0003700|GO:0006355
Lan8g0422 295 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700|GO:0006355
Lan8g0422 295 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Lan8g0422 295 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Lan8g0422 295 PANTHER DNA-BINDING DOMAIN 1 239 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0422 Lan-Chr8 6432179 6433569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0422 1 130 AP2-EREBP Transcription Factor Family AT3G16770 56.618 2.68e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan8g0422 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0422 K09286 - gmx:100819416 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0422 8 6432179 6433569 Lan4g1387 4 22948342 22950439 LSH