Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan8g0413 | ATGGCAAAAGCAAATACTAAGAACAAAATATCTCCCCCCACCGCTCCTCACCCTCCTTACTTGGAAATGATTACGGATGCAATAACAACATTGAAAGAACGCAAGGGTTCAAGCCAAACATCAATCGCAATGTTCATCGAAGAGAAACACAAAAAATCACTTCCTTCAAATTTCAACAAACTCCTCTCCGTCCAGTTGAACAAGTTCGTCAAATCAGAAAAACTCTTGAAAGTGATAAACTGTTATAAGATCTCTTCCAATTCCACAAAGGAAACCACCAACAAAACCATAACCGCTACTCCGCCACCAAAACAGAAGGGTAAAAGGAAAATTGTGGAGAAGACTAAGAGCCTGAGTCAGTTGAAGACACCGGAGACTCTCAAGAAGACCACGATAACCACCGCTCAGAAGAAAAGTGCGGTGGTGAAGGTGAAGCGTTTGAGTCAGGTGATGACCCCTGAAGGGATGAAGAAGAAAAACTCTAATTTGACACCTACGAAGAGGAAGAGTACTCCCAAACCGGTTAATTCTACTAGGCCCGCTAAGAAGGCTAGGAAATGA | 561 | 0.4278 | MAKANTKNKISPPTAPHPPYLEMITDAITTLKERKGSSQTSIAMFIEEKHKKSLPSNFNKLLSVQLNKFVKSEKLLKVINCYKISSNSTKETTNKTITATPPPKQKGKRKIVEKTKSLSQLKTPETLKKTTITTAQKKSAVVKVKRLSQVMTPEGMKKKNSNLTPTKRKSTPKPVNSTRPAKKARK* | 187 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan8g0413 | 186 | MobiDBLite | consensus disorder prediction | 90 | 112 | - | - | |
| Lan8g0413 | 186 | SUPERFAMILY | "Winged helix" DNA-binding domain | 14 | 92 | IPR036390 | - | |
| Lan8g0413 | 186 | CDD | H15 | 14 | 78 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Lan8g0413 | 186 | Gene3D | - | 13 | 110 | IPR036388 | - | |
| Lan8g0413 | 186 | PANTHER | HISTONE H1 | 5 | 184 | - | - | |
| Lan8g0413 | 186 | PANTHER | HISTONE H1 | 5 | 184 | - | - | |
| Lan8g0413 | 186 | Pfam | linker histone H1 and H5 family | 17 | 78 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Lan8g0413 | 186 | MobiDBLite | consensus disorder prediction | 146 | 186 | - | - | |
| Lan8g0413 | 186 | MobiDBLite | consensus disorder prediction | 154 | 177 | - | - | |
| Lan8g0413 | 186 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 16 | 86 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Lan8g0413 | 186 | SMART | h15plus2 | 14 | 81 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan8g0413 | Lan-Chr8 | 6341497 | 6342302 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan8g0413 | 5 | 84 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 37.500 | 9.29e-09 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan8g0413 | K11275 | - | zju:107426309 | 155.992 |