Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0404 ATGAGAAACATGGAAGAGGTAGTGTTGTTCGTTGATGATTTGAGATCACTTTCTGAGATTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTTGAAAAGTTTAGAGGCTCCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATTCAGAAATGGTGCGATGAGAAAGGAAATACAGTTTGTGAAATATGTCTCCAGAAATATGAACCTGGATATACAGCAGCTCCAAAGAAATCTCCAATATCTGATGCAGCAATGACCATTAGGGAAAGCCTACAAATTTCAAGGATGGAGCAAGAACCGTTAAACACAAGAATAGAGGGTATTGTTGAAGGAATAGCAATAGAAAACCGTTACTCTGAATGCACATCTGCTGCAGATAGAAGCGCGTCTTGTTGTAGATCACTGGCTTTAACGTTTACATTTATCTTGCTTTTAAGACATCTATTTGAAGTGCTTTCAAATGGAATGGAAGAATATCCATTTACAATTCTTACTGTGTTCATACTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAGGACTCTCGGAGGCATTCATAAAAGTATTCAGCTTCACCATCATCAGGATTCTGACAATGACACATCAATGTCCGATGAAGATGATCAAGAAAACGAGACAATTAATGTCGCAACTTTAAGACATTCATCATAG 702 0.3732 MRNMEEVVLFVDDLRSLSEISRCRICHEEEFESLKSLEAPCACSGTVKFAHRDCIQKWCDEKGNTVCEICLQKYEPGYTAAPKKSPISDAAMTIRESLQISRMEQEPLNTRIEGIVEGIAIENRYSECTSAADRSASCCRSLALTFTFILLLRHLFEVLSNGMEEYPFTILTVFILRASGIIIPMYIIIRTLGGIHKSIQLHHHQDSDNDTSMSDEDDQENETINVATLRHSS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0404 233 SUPERFAMILY RING/U-box 21 75 - -
Lan8g0404 233 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 3 229 - -
Lan8g0404 233 ProSiteProfiles Zinc finger RING-CH-type profile. 15 77 IPR011016 GO:0008270
Lan8g0404 233 Pfam Protein of unknown function (DUF3675) 76 191 IPR022143 -
Lan8g0404 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 81 IPR013083 -
Lan8g0404 233 Pfam RING-variant domain 23 70 IPR011016 GO:0008270
Lan8g0404 233 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 3 229 IPR033275 -
Lan8g0404 233 MobiDBLite consensus disorder prediction 203 233 - -
Lan8g0404 233 CDD RING_CH-C4HC3_MARCH 23 70 - -
Lan8g0404 233 SMART ringv_2 22 71 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0404 Lan-Chr8 6207036 6209824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0404 23 70 C3H Transcription Factor Family AT5G05830 38.462 4.05e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0404 - - gmx:100797029 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0404 8 6207036 6209824 Lan20g0538 20 4043302 4045996 LSH
Lan4g0948 4 11886844 11889460 Lan8g0404 8 6207036 6209824 PCT
Lan8g0404 8 6207036 6209824 Lan4g0948 4 11886844 11889460 PCT