Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0392 ATGGAGAAGAAGGATGTGGTAGTAAAGATGGAGGGTACAGTGGTGAAGTCTTCCTTCCCTTGTTATAATCAATTTAGTAACGTGTTTGATTTCTGTGAAGTGGAAAAGAGTTCTTTAGGGTTTATGGAGTTACTGGGTGTTCATGACTATAGTCCACACTTTGTTGATTTACCGCAACAACAACAACTATTAACTATGTCTGTGCCTAAGGTGGTTCAAACTCACACTACTGTGAAAGAGTGTAACACTGAGGTCTTGAACCACCAACCTGCTACTCCTAACTCCTCTTCCATTTCATCTGCGTCCACCATTGAAGCAGTTAATGATGAACACAATAAAACTGTAGAGCAAGCTGAAGAAGAAGGAGAAGAAGAAGAACAGCAGAAGACTAATAAACTGTTGAAGGCGAAGAAGAGTAATCAGAAGAGACAAAAAGAACCAAGAGTGGCGTTCATGACGAAAAGCGAGGTGGATCATTTAGAAGATGGTTATAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTCCCCAGAAGTTATTATCGTTGCACAAGTGCTTCATGTATTGTGAAGAAACAAGTGGAGCGTTTTTTTACTGATCCAACCGTTGTTGTCACTACCTATGAAGGTCAACACACACATTCAAGTCCGGTTATTCCTCGCTCGGGCCTCGCCGGTGCTCCGATAACACCAGGTGTCTCCGCCACTAACTACTTATATCAGTATCAGCAGCAACAGTTTAAGCAACAACAACTTCTTTTCAATACATTATCGTCTTTGAGTTTCCCTCACAATCATTCTACACCTTCAAAGATTGATTTTGCTCAAGAGAGACTGGTTTGTAATCCGGGGACAAATGCTGCACTTATAAGGGACCATGGGCTGCTTCAGGATGTTGTTTCTTCACATATGTTAAAAGAAGAATAG 936 0.4135 MEKKDVVVKMEGTVVKSSFPCYNQFSNVFDFCEVEKSSLGFMELLGVHDYSPHFVDLPQQQQLLTMSVPKVVQTHTTVKECNTEVLNHQPATPNSSSISSASTIEAVNDEHNKTVEQAEEEGEEEEQQKTNKLLKAKKSNQKRQKEPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCIVKKQVERFFTDPTVVVTTYEGQHTHSSPVIPRSGLAGAPITPGVSATNYLYQYQQQQFKQQQLLFNTLSSLSFPHNHSTPSKIDFAQERLVCNPGTNAALIRDHGLLQDVVSSHMLKEE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0392 311 PIRSF WRKY_txn_fact_IIc 1 311 IPR017396 GO:0003700
Lan8g0392 311 Gene3D WRKY domain 136 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan8g0392 311 Coils Coil 101 144 - -
Lan8g0392 311 SMART WRKY_cls 160 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan8g0392 311 PANTHER WRKY TRANSCRIPTION FACTOR 9 303 - -
Lan8g0392 311 SUPERFAMILY WRKY DNA-binding domain 152 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan8g0392 311 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 9 303 IPR044810 GO:0003700
Lan8g0392 311 MobiDBLite consensus disorder prediction 114 148 - -
Lan8g0392 311 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan8g0392 311 Pfam WRKY DNA -binding domain 161 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0392 Lan-Chr8 6069342 6071124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0392 16 311 WRKY Transcription Factor Family AT2G47260 44.134 1.33e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan8g0392 WRKY 3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0392 - - lang:109353563 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0392 8 6069342 6071124 Lan20g0548 20 4132272 4134027 LSH
Lan8g0392 8 6069342 6071124 Lan4g1359 4 22523194 22525095 LSH
Lan16g0936 16 16416092 16418679 Lan8g0392 8 6069342 6071124 PCT
Lan8g0392 8 6069342 6071124 Lan16g0936 16 16416092 16418679 PCT