Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0390 ATGGACACAGAGTACACAAGGAATGTTCACATGATGAGAAGTTTATCAGATTGTGGTTCATCAGCAACATATGAAAGTGAAGAACACATGGTAATGAAGAAAGGTCCATGGACAGAGGAAGAAGATTCCCTTCTGATAAACTATGTTAACGTCCATGGTGAAGGTCACTGGAACTCCATCGCTAGCATTGCAGGTCTAAAGAGAACTGGCAAAAGCTGTAGATTAAGATGGTTAAACTACTTGCGTCCAAATGTTCGACGTGGAAATATCACTCTCCATGAACAGCTTTTGATTCTTGAACTACATTCCCGCTGGGGAAATCGGTGGTCTAAAATAGCAGAAGAATTGCCTGGGAGAACAGATAATGAGATAAAGAATTATTGGAGGACGAGAGTGTTAAAACAAGCAAAGCAACTAAAATGTGATGTGAATAGTAAGAAGTTCAGGGACACCATGCGTTTTGTATGGATGCCCCGTCTTATGGAGCAGATTCAAGCCTCTTCTTCACATGGTCATAGCCAAACCACCATGTTTAGCAACACTCAAGCCCACACTGAACCTTGTGTAACCATACCCACTATGTTGTCAGTGCCTTCATCAGATAGCATGTCTTACAATTTGATGGGTGGTGGTTGTAGTTTTTCATCATCAGAACCAGATAGTTTAGAAAAAGGATCCATATCAACCTCATGCATATTGGAGCCAAAGGACTACTCGGGAGTGCAAGTAGTTGAACCAAGCAATGATTTTGGTGGTGCAGACTTGTGGACTGATGAAAATATATGCTTCTTGCAACAGCTGCTTGCAGATGATTATTAA 819 0.4127 MDTEYTRNVHMMRSLSDCGSSATYESEEHMVMKKGPWTEEEDSLLINYVNVHGEGHWNSIASIAGLKRTGKSCRLRWLNYLRPNVRRGNITLHEQLLILELHSRWGNRWSKIAEELPGRTDNEIKNYWRTRVLKQAKQLKCDVNSKKFRDTMRFVWMPRLMEQIQASSSHGHSQTTMFSNTQAHTEPCVTIPTMLSVPSSDSMSYNLMGGGCSFSSSEPDSLEKGSISTSCILEPKDYSGVQVVEPSNDFGGADLWTDENICFLQQLLADDY* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0390 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 136 IPR017930 -
Lan8g0390 272 CDD SANT 36 81 IPR001005 -
Lan8g0390 272 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Lan8g0390 272 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Lan8g0390 272 SMART sant 33 83 IPR001005 -
Lan8g0390 272 SMART sant 86 134 IPR001005 -
Lan8g0390 272 Pfam Myb-like DNA-binding domain 87 130 IPR001005 -
Lan8g0390 272 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Lan8g0390 272 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan8g0390 272 PANTHER - 22 232 - -
Lan8g0390 272 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Lan8g0390 272 CDD SANT 91 130 IPR001005 -
Lan8g0390 272 Gene3D - 91 132 - -
Lan8g0390 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 85 IPR017930 -
Lan8g0390 272 Gene3D - 33 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0390 Lan-Chr8 6054076 6055665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0390 27 271 MYB Transcription Factor Family AT2G47190 49.603 2.68e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g0390 Myb_DNA-binding 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0390 K09422 - gmx:100777932 343.199