Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0386 ATGGAAGCTAGATTTGGAACAGAAGCTTATCATTTTTATGGTGTGGGTTCTTCCACTGATTTGAGGAGTTTGGGGAAGAGATCCACAGAGTGGGATTTGAATGAGTGGAGATGGGATGGTGATCTGTTTTTAGCTAGCCGGTTGAATCCGGGGGTAGCTAGTGGTGTTGGTCAGAAATTTTTCCCTCTCGGGTCCGGAATCGCCAAGACTGGGGGTCCTGGTCCCACCAACAGTTCTTCTTCGTGTTCCGAGGAAGCAGATCTTGAGAATAGAAAAGGGAACAAGGAAGGGGAGAGGAAAAGGAGGGTAATTGTGCTTGAGGATGATGGATTGAATGAAGAAGTGGGTACCCTTAGCTTAAAGCTTGGTGGCCATGGAGAACCGTATAGGGAGATTGCGAGCTGGGATGGTGTCAATGGGAAGAAAAGCAGAGTGGCTGGAGGAACTTCGAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGACCAAAGCTAAAGATTATCACCGGCGTCATAAAGTTTGTGAAGTTCACTCCAAGGCTACTAAGGCACTTGTGGGAAATGCAATGCAGAGGTTCTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGTTGTCGAAGACGTTTGGCAGGCCATAATAAACGTAGAAGGAAAACAAATCAGGAAGCTGCTCCGAATGGAAGTACACTCAATGATGATCAGACTAGCAGTTATCTATTGATAAGTTTATTGAAGATACTTTCAAATATGCATACTGACAGGTCGGATCGGGCTACTGATCAGGATATGCTAACTCATCTTCTGAGGAGTCTTGCTAGTCCAAATGGTGAACAAGGGGGAAAGAACTTGTCTAACCTTCTGCGGGAACCAGAGAATTTGTTGAAAGAAGGGGGTTCATCTGGGAAGTCAGAGATGGTTTCAACTTTATTCTCTAATGGTTCTCAAGGCTCTCCAACTGCTATAACACAACATCAAATAGTATCTACGAGTAAAATGCAACAAGTGATGCATACACATGCTGCTAGGGTTACTGATCATCAAACTATATCTTCTACAAAGCCCAGCATTACAAACAGTCCTCCAGCTTACTCAGAAGCCAGGGACAGTTCTGCTGGACAGGTCAAGATGAACAATTTTGATTTGAATGACGTATATATTGACTCAGATGACGGCACAGAAGATCTAGAAAGATTGCCCGTCTCTACAAATCACGGGACTAACTCTCTTGACTACCCATGGGTACAACAAGATTCTCATCAGTCAAGTCCACCCCAAATAAGTAGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGTGAAGGACAGAGCCGCACTGATCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGACTTTCCTCTTGTACTTAGAGCCCAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATTGAAAGCTACATACGGCCTGGCTGTATCGTTTTGACCATTTATCTGCGTCAGGATGAGGCTGTGTGGGATGAACTTTGCTACAATCTGACTTCCAGCTTGAAAAGGCTGCTGGATGTCTCCGAGGATACTTTTTGGAGAAGTGGATGGGTTCACATCAGGGTGCAGCATCAGATAGCCTTCATTTCCAATGGTCAAGTTGTCATAGATAAATCCCTACCTTTCAGAAGTAACAATTATAGCAAGATTTTGAGTGTCAGTCCAATTGCTGTACCGGCATCGAGGAAAGCTCAATTTTCAGTTAAGGGTGTGAACTTGATATGCCCTGCCACTAGGTTAATATGTGCTTTAGAAGGGAATTATCTTGTTTGTGAAGATGCTCATGAGTCAATGGATCGACACTCCAAGGAGCTTGATGAGATCCAGTGCATCAAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTTATAGTAGTTGAGGAGGATGTTTGCTCTGAAATCTGTGTGCTTGAGCCTCTACTAGACTTGAGTGAAACTGATCTAGATATTGATGGAACTGGAAAAATTGAAGCCAAAAGTCAAGCCTTGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAACCAATTGAAATCTAGGATGGTTCACTTGAACTCTAGTGCAGAACTCTTTCCATTAAATCGTTTCAAGTGGCTCATGGAGTTTTCTATGGACCATGATTGGTGTGCCGTGGTGAGAAAGCTATTGAACCTGCTGTTTGATGGAACTGTGAATTCAGGAGATCACCCTTCCCTGTATCTTGCACTTACAGAGATGGCCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGATCTGCTTTTGAGATATGTTCCTGATAATGTCTCTGATAAACTAGGAACTGAAGACAAGGCACTAGTTGAAGAGAACAAGAGCTTGTTTAGACCTGATGTTGCTGGTCCCGCTGGTTTGACACCCCTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCATGGTGGGAATTGAAGCGTGGAAGAATGCTCGTGACAGCACAGGCTCCACGCCTGAGGATTATGCACGCTTACGTGGCCATTACACTTACATTCACTTAGTGCAGAAGAAAATTAATAAGAGACAAGGATCATCTCATGTGGTGGTTGAGATTCCCAGCAATGTGACAGAAAGCACTACAAACCAGAAGCAAAATGAGTCATCCACTACCTTCGAGATCGGAAAGGCTGTTGTAAAACGCGGCCAAGGTATCTGCAAAGCTTGTGATACTAAATTGTCTTGTAGAACTGCAGTAGGCAGGTCTTTTGTATATAGACCTGCAATGCTCTCAATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAGAGCTCGCCGGTCGTTTTATATGTATTCCAACCCTTCAGGTGGGAGTCATTGGAATTCGGTACATGCTAA 3030 0.4389 MEARFGTEAYHFYGVGSSTDLRSLGKRSTEWDLNEWRWDGDLFLASRLNPGVASGVGQKFFPLGSGIAKTGGPGPTNSSSSCSEEADLENRKGNKEGERKRRVIVLEDDGLNEEVGTLSLKLGGHGEPYREIASWDGVNGKKSRVAGGTSNRAVCQVEDCGADLTKAKDYHRRHKVCEVHSKATKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQEAAPNGSTLNDDQTSSYLLISLLKILSNMHTDRSDRATDQDMLTHLLRSLASPNGEQGGKNLSNLLREPENLLKEGGSSGKSEMVSTLFSNGSQGSPTAITQHQIVSTSKMQQVMHTHAARVTDHQTISSTKPSITNSPPAYSEARDSSAGQVKMNNFDLNDVYIDSDDGTEDLERLPVSTNHGTNSLDYPWVQQDSHQSSPPQISRNSDSASAQSPSSSSGEGQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAVWDELCYNLTSSLKRLLDVSEDTFWRSGWVHIRVQHQIAFISNGQVVIDKSLPFRSNNYSKILSVSPIAVPASRKAQFSVKGVNLICPATRLICALEGNYLVCEDAHESMDRHSKELDEIQCIKFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLDLSETDLDIDGTGKIEAKSQALDFIHEMGWLLHRNQLKSRMVHLNSSAELFPLNRFKWLMEFSMDHDWCAVVRKLLNLLFDGTVNSGDHPSLYLALTEMALLHRAVRRNSKQLVDLLLRYVPDNVSDKLGTEDKALVEENKSLFRPDVAGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGSSHVVVEIPSNVTESTTNQKQNESSTTFEIGKAVVKRGQGICKACDTKLSCRTAVGRSFVYRPAMLSMVAIAAVCVCVALLFKSSPVVLYVFQPFRWESLEFGTC* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0386 1009 MobiDBLite consensus disorder prediction 353 381 - -
Lan8g0386 1009 MobiDBLite consensus disorder prediction 219 241 - -
Lan8g0386 1009 SUPERFAMILY SBT domain 153 233 IPR036893 GO:0003677|GO:0005634
Lan8g0386 1009 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Lan8g0386 1009 MobiDBLite consensus disorder prediction 409 457 - -
Lan8g0386 1009 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
Lan8g0386 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1008 - -
Lan8g0386 1009 MobiDBLite consensus disorder prediction 400 457 - -
Lan8g0386 1009 Gene3D - 753 912 IPR036770 -
Lan8g0386 1009 MobiDBLite consensus disorder prediction 67 96 - -
Lan8g0386 1009 Pfam SBP domain 155 228 IPR004333 GO:0003677
Lan8g0386 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1008 IPR044817 GO:0003677
Lan8g0386 1009 SUPERFAMILY Ankyrin repeat 779 895 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0386 Lan-Chr8 6026413 6033111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0386 1 1008 SBP-box Gene Family AT3G60030 53.899 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan8g0386 SBP 4.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0386 - - lang:109336004 1729.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0386 8 6026413 6033111 Lan20g0559 20 4235381 4241916 LSH
Lan8g0386 8 6026413 6033111 Lan4g1348 4 22391389 22397339 LSH