Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0384 ATGGAGAAAAAAACAATTGGCTCTGCAATTTCTCTTATTCTAGTGGTGGGTGTTACCATAGGCATTGTTGTTCTTAACGACGACAAAAAAGGTGTCACAAACGAAGAATTGAACACACATAGTAAAACCGTGGATGCATTATGTCAAAATACCGACGATAACAAACTTTGCCACGAAACTCTCTACCCAGTAGAAGCCAAAGCACCAAGTGATTACGTAAAAACCGTGATGAAACATTCCATGAACAGTTTGATCAAAGCCTTCAACATGAGTGATAAGTTGAATGTAGAGAACAATAACAACAGCGTTGGCATAAAGATGGCACTTGAGGATTGCAAGGACTTGTTAGAGTTCGCCATTGATGAATTGAAAGCTTCAAATATTGTATTTAGTGACAAGAACAAAAATGATGTTGCTGCTGAACTCAAAAACTGGTTAGGTGCTGTCATTGCCTACGCACAATCGTGCCTTGATGGCTTTAACACTGATGGTGAAAAGAAGGTACAATCACAGTTGCAAACAGGTAGCTTGGACAATGTGGAAAAGCTTACTGCATTGGCACTTGATGTTGTGACTGGAATCTCAGAAATGTTAGCTTCACTTAACCTGACTTTGAATGTGAAACCTACCTCTCGCCGTCTCCTTAATGATTTGGACAAAGATGGTTATCCAATTTGGGTGTCCATTAAAGATCGCAAGCTCTTGGCTAATAGAGATTTAGTGGTAAAACCCAATGCAGTTGTTGCCAAAGATGGGAGTGGCCAATTTAAGAATGTTCTTGATGCTATTAATGCATACCCAAAAAAACATAAAGGGAGATACATTATTTATGTTAAGGCTGGAACATATGATGAGTATATCATTGTTGACAAGAAGAAAACCAATATTCTCTTGTATGGTGATGGCCCTACAAAGACCATTATCACTGGTAGCAAGAATTTTAAGGATGGTGTGAAGACACTCAGGACTGCGACATTCTCGACTCAAGCTGAAAATTTCATTGCCAAATCAATCGCATTCGAGAACACTGCTGGTCCTGAAGGTCACCAAGCAGTGGCACTTCGCGTGCAAGGTGATCGTTCAACGTTCTTCGATTGCGCCATGCATGGTTACCAAGACACACTATATGCCCATGCACACCGCCAATTCTACCGCAACTGTGAAATCTCAGGAACAGTGGATTTCATATTTGGCTACTCCACCACATTGATCCAAAACTCCAAGATCATAGTTAGAAAGCCAGGTCCAAACCAACAAAACATAGTGGTAGCTGATGGCACAGTACAAAAGAACATGCCAACAGGAGTAGTCCTTCAGAATTGTGAAATAGTCCCAGAGAAGAGTCTTATCCCTGATAGGTTGAATGTGAAGTCCTATTTGGCAAGGCCATGGAAGGCTTACTCTAGAGCAATTTTTATTGAAAATACAATTGGTGATTTTATTCAACCAGATGGGTTTCTTCCATGGCAAGGGAACCAATTCCTTAATACTTGTTACTTTGCGGAGTATGGTAATAATGGTGTTGGTGCTAATGCTAAAAATAGAGTCAAGTGGGGTCGTGGGGTCCTTCAAAAAAATGTTGCTGCTCAATACACTGCTGAACAATGGTTACAAGCTGATACATGGTTGCCTACAACTGGCATACCTTACCAAACTGGTTTTACCAGAGCTTGA 1674 0.4062 MEKKTIGSAISLILVVGVTIGIVVLNDDKKGVTNEELNTHSKTVDALCQNTDDNKLCHETLYPVEAKAPSDYVKTVMKHSMNSLIKAFNMSDKLNVENNNNSVGIKMALEDCKDLLEFAIDELKASNIVFSDKNKNDVAAELKNWLGAVIAYAQSCLDGFNTDGEKKVQSQLQTGSLDNVEKLTALALDVVTGISEMLASLNLTLNVKPTSRRLLNDLDKDGYPIWVSIKDRKLLANRDLVVKPNAVVAKDGSGQFKNVLDAINAYPKKHKGRYIIYVKAGTYDEYIIVDKKKTNILLYGDGPTKTIITGSKNFKDGVKTLRTATFSTQAENFIAKSIAFENTAGPEGHQAVALRVQGDRSTFFDCAMHGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSTTLIQNSKIIVRKPGPNQQNIVVADGTVQKNMPTGVVLQNCEIVPEKSLIPDRLNVKSYLARPWKAYSRAIFIENTIGDFIQPDGFLPWQGNQFLNTCYFAEYGNNGVGANAKNRVKWGRGVLQKNVAAQYTAEQWLQADTWLPTTGIPYQTGFTRA* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0384 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 195 IPR035513 -
Lan8g0384 557 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 192 IPR006501 GO:0004857
Lan8g0384 557 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Lan8g0384 557 SUPERFAMILY Pectin lyase-like 241 552 IPR011050 -
Lan8g0384 557 SMART PMEI_2 39 190 IPR006501 GO:0004857
Lan8g0384 557 Pfam Plant invertase/pectin methylesterase inhibitor 43 189 IPR006501 GO:0004857
Lan8g0384 557 CDD PMEI-like_3 46 195 - -
Lan8g0384 557 Gene3D - 240 554 IPR012334 -
Lan8g0384 557 PANTHER PECTINESTERASE 3 555 - -
Lan8g0384 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 192 IPR035513 -
Lan8g0384 557 PANTHER PECTINESTERASE 3 555 - -
Lan8g0384 557 Pfam Pectinesterase 245 540 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0384 Lan-Chr8 6001557 6004883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0384 42 557 Carbohydrate Esterase AT2G26450 43.074 2.57e-135 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0384 K01051 - gmx:100820142 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0384 8 6001557 6004883 Lan20g0563 20 4275137 4278421 LSH
Lan8g0384 8 6001557 6004883 Lan16g0947 16 16548402 16551088 PCT
Lan8g0384 8 6001557 6004883 Lan2g0243 2 1993557 1996264 PCT