Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0381 ATGAGAAAAGCCACAAGTTCTAATTCCTCCTCATCTATCAACAGCAACAACAACAACAACCTTTTTATCTCAACAGCATCTTCTCTTACACATGCAAATTCTGATGAACTTCATACAGATCTTAGGCTTGGACTCGGCATTCCCATCACTCAACATGTTGGCTCTTCTATGTCAGGGAGGAACCGGCAACAATTGCAGCCACTTCAAAGTGGTTCAACACAATCTGCTGAAGTAAATGATGAGAGCTTCTTTGTGAAGGTGTATATGGAAGGCATTCCTATTGGCAGAAAACTCAATCTATTAGCTCATGATGGGTACCTAGAGTTAGTGAAAACTCTTGAACAAATGTTTGACACTACCATTCTATGGGGGAATGAGATGGATAGAGTGCAACCAGAGAGATGCCATGTGTTAACATATGAAGATGGAGAAGGGGATTTGGTTATGGTTGGGGATATACCTTGGGAGATGTTCTTATCAACTGTAAAGAGGTTGAAGATCACAAGGGTCGACGCATTCGGGTGTTAA 528 0.4148 MRKATSSNSSSSINSNNNNNLFISTASSLTHANSDELHTDLRLGLGIPITQHVGSSMSGRNRQQLQPLQSGSTQSAEVNDESFFVKVYMEGIPIGRKLNLLAHDGYLELVKTLEQMFDTTILWGNEMDRVQPERCHVLTYEDGEGDLVMVGDIPWEMFLSTVKRLKITRVDAFGC* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0381 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Lan8g0381 175 SUPERFAMILY CAD & PB1 domains 74 167 - -
Lan8g0381 175 MobiDBLite consensus disorder prediction 55 74 - -
Lan8g0381 175 PANTHER AUXIN-INDUCED PROTEIN 7 174 - -
Lan8g0381 175 Pfam AUX/IAA family 70 169 IPR033389 -
Lan8g0381 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 174 IPR003311 GO:0005634|GO:0006355
Lan8g0381 175 Gene3D - 76 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0381 Lan-Chr8 5969781 5971312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0381 63 167 B3 DNA Binding Superfamily AT4G23980 38.095 7.84e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan8g0381 AUX_IAA 1.9e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0381 K14484 - gmx:100781660 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0381 8 5969781 5971312 Lan20g0566 20 4331082 4332691 LSH
Lan16g0954 16 16606668 16608256 Lan8g0381 8 5969781 5971312 PCT
Lan8g0381 8 5969781 5971312 Lan16g0954 16 16606668 16608256 PCT