Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0378 ATGGCTTCAATTATAGGCGTTTCTTCCATTTACCAAACCCCTTCTCTTCAACGACCACAACAAAGAAACCCTTCCGTTTCATTGAAACCATTGTCGTTTTACAACAACAACAACGATAACTCCCACTTCAACACTCTTCTCAGAGCTCACCTTTATAATCGCAGAATTTCTGCCATTGCTACCAACAATTCTTCTCTACTCGCTGAAGAAGCACTTGATGGATTAGGTTTTGATGATGTCACTGATGATAACGATGATTTTGATAGTTTTGATTATGAGAATGAAAATGAAAACCCTTCTGCGACTATTAGTACTGATGAACTTGATGTTTCTAAGCTGGATTTGCCTTCGCGACTCGTGGAATCGCTTAAGAAGCGTGGAATCACTCACCTTTTCCCTATTCAGAGAGCTGTGCTAGTGCCTGCACTAGAAGGTAAAGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACATTAGCATTTGGAATTCCAATTCTTAAAGGCCTCACTGATGATGACCGGAATCCTATAAGGCGTGGTCGTCTTCCTAAAGCATTGGTCCTTGCTCCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATCAATGAATCTGCGCCTTATCTGCAAACAGTTTGTGTTTATGGTGGTGTTTCCTATGTAATTCAGCAAAGTGCACTTTCGCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGACCTTTTAAATGGGAACAGCCTTAAACTGAATGAAATTCAGTATTTGGTTCTTGATGAGGCTGACCGGATGCTTGCTGTTGGGTTCGAGGAGGATGTGGAAACAATTTTACAGACTGTCCCATCTGAGCGGCAGACCATGCTTTTTTCTGCAACCATGCCGGGTTGGGTGCAAAAATTATCAAGAAAGTATTTGAACAAACCGTTGACAATTGATTTGGTCGGTGACGAAGAAGAAAAGCTAGCTGAAGGGATCAAGCTTTATGCTATGTCTGCCACCTCTAATTCAAAGAGAACAGTCCTTTCTGATCTTGTAACTGTTTATGCAAAGGGTGGCAAGACTATTGTATTTACGCAGACAAAAAAAGATGCTGATGAAGTATCATTGTCCTTAACAAATATTATATCTTCTGAAGCGCTGCATGGTGATATATCCCAGCATCAGAGAGAGAGAACATTAAATGGTTTTCGGCAAGGGAAATTTACAGTGCTTGTTGCCACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATCCATTATGAACTTCCAAATGACCCTGAGACTTTTGTACACCGCTCTGGGCGTACTGGGCGTGCAGGAAAACGTGGTTCTGCTATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGCTGTAAATTTGAATTTATTAGTCCACCAGCAATTGGAGAGATTTTGGAGTCATCTGCCGATCAAGTTGTTGCTACGCTCAAACTTGTTCATCCCGAGTCTATTGAGTTCTTCACCCCAACTGCACAAAAACTGTTTGAGGAACAAGGCACAAGTGCCCTTGCAGCTGCACTAGCACAGCTTAGTGGATTCTCTCGACCTCCATCATCCCGGTCTCTTATCAACCATGAACAGGGATGGGTTACGTTACAACTGACTCGAGATGGCGATAACTCCAGAAGATTTCTTTCTGCAAGATCAGTAACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACACTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCCAAAGAGTTACTCACTAAGGTGATTCCACCAGGAAACACTATTTCAAAGATCACCAAGTTACCTCCTTTGCAAGATGATGAACCTGCAAGTGATTTCTATGGGAGGTTTTCCGATGACAGAGGACAAAGAAGTTCTAGAAATTCAAGAGGAGGTTTTAAGAGCTCACAGTCATGGGGAGGTGGCCGAAACTCTGATGATGACTTTGGTAGTTCATATGGTAGAGGCGGCGGTAGAAGTTATAGATCTGGTAACAACAACAACAGGTCTCAAACAAGGAGAAGCAGTGGGGATGACTGGCTGATTGGAGGTAGCGGATCAAGCAGGTCTTCATCATCAAACAGAAGTAGCTATGGAGGAGGAAGCTATGGAGGAGGAGCATGTTATAATTGTGGACAAACTGGGCATAAGGCATCAGAATGTAAGAATAGAGACTTTTTTTAG 2274 0.4266 MASIIGVSSIYQTPSLQRPQQRNPSVSLKPLSFYNNNNDNSHFNTLLRAHLYNRRISAIATNNSSLLAEEALDGLGFDDVTDDNDDFDSFDYENENENPSATISTDELDVSKLDLPSRLVESLKKRGITHLFPIQRAVLVPALEGKDIIARAKTGTGKTLAFGIPILKGLTDDDRNPIRRGRLPKALVLAPTRELAKQVEKEINESAPYLQTVCVYGGVSYVIQQSALSRGVDVVVGTPGRIIDLLNGNSLKLNEIQYLVLDEADRMLAVGFEEDVETILQTVPSERQTMLFSATMPGWVQKLSRKYLNKPLTIDLVGDEEEKLAEGIKLYAMSATSNSKRTVLSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTNIISSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKRGSAILMYTSSQRRTVRSLERDVGCKFEFISPPAIGEILESSADQVVATLKLVHPESIEFFTPTAQKLFEEQGTSALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLTKVIPPGNTISKITKLPPLQDDEPASDFYGRFSDDRGQRSSRNSRGGFKSSQSWGGGRNSDDDFGSSYGRGGGRSYRSGNNNNRSQTRRSSGDDWLIGGSGSSRSSSSNRSSYGGGSYGGGACYNCGQTGHKASECKNRDFF* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0378 757 MobiDBLite consensus disorder prediction 688 729 - -
Lan8g0378 757 Pfam Zinc knuckle 737 753 IPR001878 GO:0003676|GO:0008270
Lan8g0378 757 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 260 268 IPR000629 -
Lan8g0378 757 Gene3D - 109 318 IPR027417 -
Lan8g0378 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 503 IPR001650 -
Lan8g0378 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 314 IPR014001 -
Lan8g0378 757 MobiDBLite consensus disorder prediction 658 675 - -
Lan8g0378 757 Pfam GUCT (NUC152) domain 535 635 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lan8g0378 757 SUPERFAMILY Retrovirus zinc finger-like domains 720 754 IPR036875 GO:0003676|GO:0008270
Lan8g0378 757 CDD SF2_C_DEAD 328 457 - -
Lan8g0378 757 PANTHER - 12 747 - -
Lan8g0378 757 SMART helicmild6 368 448 IPR001650 -
Lan8g0378 757 Pfam DEAD/DEAH box helicase 132 303 IPR011545 GO:0003676|GO:0005524
Lan8g0378 757 Pfam Helicase conserved C-terminal domain 343 448 IPR001650 -
Lan8g0378 757 CDD GUCT_Hera 542 622 - -
Lan8g0378 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 469 IPR027417 -
Lan8g0378 757 Gene3D - 329 522 IPR027417 -
Lan8g0378 757 MobiDBLite consensus disorder prediction 642 657 - -
Lan8g0378 757 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 12 747 - -
Lan8g0378 757 SMART ultradead3 127 331 IPR014001 -
Lan8g0378 757 SMART c2hcfinal6 737 753 IPR001878 GO:0003676|GO:0008270
Lan8g0378 757 CDD DEADc 119 315 - -
Lan8g0378 757 MobiDBLite consensus disorder prediction 625 729 - -
Lan8g0378 757 Gene3D - 697 756 - -
Lan8g0378 757 ProSiteProfiles Zinc finger CCHC-type profile. 738 753 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0378 Lan-Chr8 5920139 5925985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0378 113 470 Eukaryotic Initiation Factors Gene Family AT1G72730 38.692 2.88e-66 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0378 - - vra:106757668 1003.82