Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0352 ATGGAGCTGCTACTTCTTCGAGCAATGATTCTCCCTCTCTTTTTGTTACTTATCTCTTCTTCCCCGGTTTATATAGTTGCACAAGATTGTGGTAACAACGGAATTACAAAAACGATTGTTGTCGATAAAAGTGGGAAAGCAGACTTCACAACAATTCAAGAAGCAATTGATTCAATAAAGGAAAACAACAATCAATGGGTTAAAGTTCGCATAAATGCTGGCACTTACACAGAGAAGGTCGATATTCCTTATAACAAGCCATGCATCTATTTGGAAGGTGAAAACAAAGATTCCACCATTATTACATACGATGACCACCAACAAACAGATACCAGCGCCACTTTTTCTTCGGCCCCAAACAATATTATTGCACGGTTCATTACTTTTAAGAACTCATACAATTTGCAAGATGGGAAACTTGGAACCAAAGATAGAGAAGTTGTCCCAGCACTTGCAGCAAGAATATATGGAGACAAATCTGTCTTTCATGATTGCAACTTCATTGGTTTTCAAGATACACTGTGGGATGTAGAAGGTCGCCATTACTTCAAAGATTGCACTATAGAAGGAGCTATAGACTTCATCTTTGGTTATGGTCAATCATATTTCGAGAATTGCATTCTCAATGCGACCTCCTCAGGTTATGTGACTGCCCAAGGACGCCATGAGAGGAATGAAACTAGTGGTTTTGTATTCAGCGGTGGTAAATTGATTGGTAATGGACAAACATTCTTAGGAAGAGCGTATGGACCATTTTCTAGAGTCATATTTTATGGAACATATTTGAGTTCGGTGGTTGTACCTCAAGGATGGAGTGCTTGGAAATCAAACAATGGTTCTGGAACGATTTACATTGAAGCTGAATGTGAAGGGCCAGGTGCTAATACTACTGGGCGCGTACCTTGGTCCAAGAAGCTCGATAGATCAAAAATGGGTAACTATACGAGAAAGAGCTTTTCCGACCCTCTCTCCCGGTCACCTGGTGGCTTGTGTCTGTATTGTTACTGTGAAGACATAAAAGGTGCAGTTTATGATATTGCTAATTTTTGGGCTCCTAGCAATGATGGAATTCAAGCTTTATTTTACCAAACTCAATGGAATATTATTGGGCCAAATTTGTGTTCCATGGTCAAGAAGGTCTTTAGGAACCCAACTTCTGTTGGGAGTCTTAATGATACGCTTATAACTCTGATTCCTAAACTGGAAAATGTTACTTACTTGAAGCAATTCAGATATATAAGCCTCTACAGCATCTCCTATAAGCTTTCTCCTTCCAAATGGTATTGGAATGTCCCTCTTCTCACTAGCATGCTCCCTCCGAATTTGCGCATCCCAAAAAGCAGAACCTTCTGTCTTATGTGGGAGTGGCAGGGCCCCCAGAGAGTTAAATGCCTCATTTGGAGAATTGCTCATGAAGCTCTACTTACCAATGAAGCTAGATTCTATAGGAAGATGGCTCCAAATCCTTATTGTCACATTTGTGTGGATAAATCGGAGTCTTTGCTTCTTTGCTCCATGATTGTCCTTTTGCTAGGGAGGTTTGGAAGTTGA 1551 0.4036 MELLLLRAMILPLFLLLISSSPVYIVAQDCGNNGITKTIVVDKSGKADFTTIQEAIDSIKENNNQWVKVRINAGTYTEKVDIPYNKPCIYLEGENKDSTIITYDDHQQTDTSATFSSAPNNIIARFITFKNSYNLQDGKLGTKDREVVPALAARIYGDKSVFHDCNFIGFQDTLWDVEGRHYFKDCTIEGAIDFIFGYGQSYFENCILNATSSGYVTAQGRHERNETSGFVFSGGKLIGNGQTFLGRAYGPFSRVIFYGTYLSSVVVPQGWSAWKSNNGSGTIYIEAECEGPGANTTGRVPWSKKLDRSKMGNYTRKSFSDPLSRSPGGLCLYCYCEDIKGAVYDIANFWAPSNDGIQALFYQTQWNIIGPNLCSMVKKVFRNPTSVGSLNDTLITLIPKLENVTYLKQFRYISLYSISYKLSPSKWYWNVPLLTSMLPPNLRIPKSRTFCLMWEWQGPQRVKCLIWRIAHEALLTNEARFYRKMAPNPYCHICVDKSESLLLCSMIVLLLGRFGS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0352 516 Gene3D - 32 327 IPR012334 -
Lan8g0352 516 ProSitePatterns Pectinesterase signature 2. 188 197 IPR033131 -
Lan8g0352 516 Pfam Pectinesterase 39 319 IPR000070 GO:0030599|GO:0042545
Lan8g0352 516 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 319 - -
Lan8g0352 516 PANTHER PECTINESTERASE 7 319 - -
Lan8g0352 516 SUPERFAMILY Pectin lyase-like 36 321 IPR011050 -
Lan8g0352 516 Pfam zinc-binding in reverse transcriptase 445 500 IPR026960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0352 Lan-Chr8 5576646 5591469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0352 29 276 Carbohydrate Esterase AT2G19150 46.875 7.75e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0352 - - lang:109353850 1034.25