Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0349 ATGGAAGATATTTTCAAGATGAACCCTACTCTTCTATCATGTCCAGATAATGTTGTTAGAGTTGGCAACGTTGCTTTTACTTCTGAATTGCATCTAGGACCTGCGGCTAATGATTATCTTCAACTGGAAGAGCCCGAACCGGGTTCAGGTAACTCGGATCGGCTTATCAAAAACCAGATCGCCAATCATCCTCTTTATCCAGATTTAGTGTCTGCATACATACAATGCCAAAAGGTTGGAGCACCACCAGAACTGGCGTCTGTCTTTGAAGAAATAGGCCGTGAAAGTCACCCCACCGGTGCTCGAGGTGAGATCGGAGATGATCCCGAGCTCGACGAATTCATGGAATCATACTGCGAAGTTGTTCATAAATTCAAGGAGGATTTGTCTAAGCCCTTCAACGAAGCGACGTTGTTTTTGTGCAATATGGAATCACAATTCAACAACCTCTGTAAGGGAACACTAACAATGCCATTGGATATAAACAACAACCGCTCCGATGAGGAAGCCGGGACTTCAGAGAATGGATTAAATTGTGAGAATGTGGAATCAGTTGAAGCTTATGAATCTTCTAGCACACATCCAAGTGATGATAAAGAGCTCAAAGAAATGCTTCTTCATAAGTATAGTGGATATCTTAGTAGCTTGAGAAAGGAATTTCTAAAGGAAAGGAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGCACTGATGGATTGGTGGAATACTCACTATAGATGGCCATATCCTACGGAGGAGGAGAAAGTGAAGCTATCAGAAATGACTGGACTGGATCAAAAGCAGATAAATAATTGGTTTATCAATCAGAGGAAACGACATTGGAAACCATCTGAAGATATGCGATGTGCCATTATGGAGGGTGTGAGTGGAGGAGGACCTATGTAA 906 0.4238 MEDIFKMNPTLLSCPDNVVRVGNVAFTSELHLGPAANDYLQLEEPEPGSGNSDRLIKNQIANHPLYPDLVSAYIQCQKVGAPPELASVFEEIGRESHPTGARGEIGDDPELDEFMESYCEVVHKFKEDLSKPFNEATLFLCNMESQFNNLCKGTLTMPLDINNNRSDEEAGTSENGLNCENVESVEAYESSSTHPSDDKELKEMLLHKYSGYLSSLRKEFLKERKKGKLPKDARMALMDWWNTHYRWPYPTEEEKVKLSEMTGLDQKQINNWFINQRKRHWKPSEDMRCAIMEGVSGGGPM* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0349 301 Gene3D - 218 292 - -
Lan8g0349 301 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Lan8g0349 301 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Lan8g0349 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 294 - -
Lan8g0349 301 SMART ELK_2 200 221 IPR005539 GO:0003677
Lan8g0349 301 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Lan8g0349 301 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Lan8g0349 301 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Lan8g0349 301 Pfam ELK domain 200 221 IPR005539 GO:0003677
Lan8g0349 301 SMART HOX_1 222 287 IPR001356 GO:0003677
Lan8g0349 301 Pfam KNOX2 domain 105 151 IPR005541 GO:0003677|GO:0005634
Lan8g0349 301 CDD homeodomain 224 284 IPR001356 GO:0003677
Lan8g0349 301 SUPERFAMILY Homeodomain-like 222 292 IPR009057 -
Lan8g0349 301 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Lan8g0349 301 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 50 294 - -
Lan8g0349 301 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0349 Lan-Chr8 5522855 5528864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0349 55 293 Homeobox Transcription Factor Family AT1G70510 50.607 1.89e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan8g0349 KNOX2 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0349 - - gmx:102660463 452.21