Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0343 ATGGCGACGAGAAATCGCACTTTGCTTTTCAGAAAGCACAGAGATGCATTGAAGAGTGTTCGTTTTCCCTCTTCTTCTTCTCCGGCGTCCACCTCTTCCGGCGGTGGCCCCGTCATCGAATTGGTCAGCACTTCGCTTCTCAACCCTAATCGCTCTTACGCTCCCATTAGCACCGAGGATCCTGCTTATTCAAGTAAGGGCTCACATCCTATTACTGTGGGGTTACCTCCGGCATGGGTGGATTTATCTGAAGAAATTTCAGCAAATGTACAACGTGCACGCACAAAAATGGCAGAGCTGGCCAAGGCTCATGCAAAGGCCTTAATGCCATCATTTGGAGATGGCAAGGAAGATCAACATGCTATTGAGTCTCTGACGCACGAGATCACTGACTTGATAAAGAAATCAGAAAGGGGACTGCGACGACTCTCTACCGCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTGGAGCTCCGCAAGAAACAATCAACATATTTGAAGCGCCTTAGGCAGCAAAAAGAGGGCCAAGATGGGGTCGATCTAGAGATCAACATGAATGGGAGTAAAGCCAGATATGAAGATGATGACTTAGATGATATGATATTTAATGAGCATCAGATGGCCAAGCTGAAAAAAAGTGAAGCATTCACTGTTGAAAGAGAAAAGGAGATCCAACAAGTTGTGGAATCTGTAAATGAGCTTGCTCAGATTATGAAGGATTTATCGGTATTAGTCATAGACCAGGGAACAATTGTTGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGACGATGGACTTAAACAGCTGCAGAAGGCCGAGAGAACTCAGAAAAAGGGAGGAATGGTAATGTGTGCAACAGTTCTTCTTATCATGTGCTTGGTTATGTTGGTTCTCTTGATCATTAAGGAAATTATTTTGTGA 978 0.4448 MATRNRTLLFRKHRDALKSVRFPSSSSPASTSSGGGPVIELVSTSLLNPNRSYAPISTEDPAYSSKGSHPITVGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQHAIESLTHEITDLIKKSERGLRRLSTAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEINMNGSKARYEDDDLDDMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDDGLKQLQKAERTQKKGGMVMCATVLLIMCLVMLVLLIIKEIIL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0343 325 CDD SNARE_syntaxin16 234 290 - -
Lan8g0343 325 Coils Coil 83 103 - -
Lan8g0343 325 SMART tSNARE_6 224 291 IPR000727 -
Lan8g0343 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan8g0343 325 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 320 - -
Lan8g0343 325 Pfam SNARE domain 265 317 IPR000727 -
Lan8g0343 325 Gene3D - 76 283 - -
Lan8g0343 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Lan8g0343 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Lan8g0343 325 PANTHER SYNTAXIN 1 320 IPR045242 -
Lan8g0343 325 SMART SynN_4 70 185 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0343 Lan-Chr8 5442139 5446868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0343 1 325 SNARE and Associated Proteins AT5G26980 78.899 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0343 K08489 - gmx:100796741 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0343 8 5442139 5446868 Lan20g0630 20 4973030 4976776 LSH