Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0334 ATGACAAGAAAGAAGGTGAAACTTGCCTACATAGTCAATGACTCTGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGGTTTGTTGAAGAAGGTTGATGAACTCACCACCCTTTGTGGCATTGAAGCTTGTGCTATAATTTATAGCCCCTTTGAACCTCAACCAGAGGTTTGGCCATCTCCATGGGGAGTTCAAAAGGTGCTTTCAAAGTTAAGGACCATGCCTGAATTGGAGCAAAGTAAGAAGATGGTGAATCAAGAAACTTTCTTGAAACAAAGGATTCTGAAGGCTAAAGAGCAAGTGATGAAACTGCAGAAAGAGAATAGGGAGAAGGAGATAACTCAGCTCATGTTTAAGTGTCTTGGTTCTGATAAGGTACAGTTCAATAACTTGAGTGCAACTGATTTGAATGATCTTGCTTGGATGATTGATCAGAACTTGAAGCACATTAAGAGAATGATGGAAAAAGTGGGAAAAAATGATCAAATGAATCAAGGTAGAACCCACATGGTGGCACCAACAACACTATCACTTTCAGGTAGGGTGCCCAAGAATGAAGAAATAGCATTGGAGATGATGAATGGTAATGGGAATGAGGCAATGCAATTTGGAGAAACCAATCTCATAATGGGTTTTGACCTTAACCCATTATTGTTTTGA 660 0.397 MTRKKVKLAYIVNDSARKATYKKRKKGLLKKVDELTTLCGIEACAIIYSPFEPQPEVWPSPWGVQKVLSKLRTMPELEQSKKMVNQETFLKQRILKAKEQVMKLQKENREKEITQLMFKCLGSDKVQFNNLSATDLNDLAWMIDQNLKHIKRMMEKVGKNDQMNQGRTHMVAPTTLSLSGRVPKNEEIALEMMNGNGNEAMQFGETNLIMGFDLNPLLF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0334 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 189 - -
Lan8g0334 219 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lan8g0334 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan8g0334 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lan8g0334 219 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lan8g0334 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan8g0334 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan8g0334 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan8g0334 219 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan8g0334 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 - -
Lan8g0334 219 Coils Coil 87 114 - -
Lan8g0334 219 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0334 Lan-Chr8 5369534 5370271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0334 1 183 Type I MADS-box Gene Family AT5G48670 56.284 7.34e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan8g0334 SRF-TF 4.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0334 - - gmx:100813231 234.187