Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0332 ATGGCTAGAATGCCTAACTATAGATTTCTCTCCATACATCAAACTACCTTATACACCCTTGTTTCCTTCTTCATCCTCTTCATATCTCCCTCTCTTTCATCTTTCTCCTTCTCCCCAAATACCACATGCAACCTAACACCTTATCCAACATTTTGCACAACCACCCTTCCCCCTCAATATTTATCTATACATGACCAATGCCACTTTTTCCTTATCCAATCTTTATCAATAACCAAAACCATTATAGAAGAGGTCTCTTCTTACCTTAGAGACCAATCCTATATTCATGTTTCCACAACACATGCCCTTGAAGATTGTCTTAATCTTGCACAACTTAACATTGATTTTCTGTCCAATGTTCTTCAAGCCATAGAAAACACTGTCACTAATTATCAAGCTTATAATTTTCAAACCATGCTTAGTGCCATTTTAACAAATCAAAACACATGCTTAGATGGTTTTCATGAAGTAACACCATATCCTAGAATTACCACAGCATTATTAAACTCTCTCTCAGATGGGATTAAACTTTATAGCATATCATTGGCTCTATTCACACACGGTTATGTTAGTGGTCATGGCACAGGAAAATTAACTTTTGAAAGAAAGTTACTGCAAAATACAAGCATTGATAATAATGTAGTGGTGAGAGAAAAGGTGGTGGTGAATTTAGATGGGTCAAGAGATTTTACTACAATAAATGATGCTGTGGAAGCTGCACCTAACAATACAGGCACCAACAATGGGTACTATGTTATTTATGTTGTCACTGGGGTTTATTATGAGTATGTGTCTATTGCTAAGAGCAAACAGAACGTGATGATTGTTGGTGATGGCATAAACCGCACTGTGATCACCGGCAATAGAAGTGTTATTGATGGTTGGACCACTTTCCAATCTGCAACATTTGCTGTAGTTGGAGAAGGATTTGTTGCAGTAAACATAAGTTTTCGTAACACAGCAGGATCCAACAAGCATCAAGCTGTTGCTGTAAGAAATGGTGCAGATATGTCCACATTTTATAATTGTAACTTTGAAGGGTACCAAGACACACTATACACACATTCCTTTAGACAATTTTACAAAAACTGTAACATCTATGGCACAATTGATTTCATATTTGGCAATTCAGCAGCAATATTCCAAGACTGTTTCATGTATCCTAGACTTCCAATGCAAAACCAATTCAATGCAATCACAGCACAGGGCAGAACAGATCCTAACCAAAACACTGGCATGTGCATACAAAACTGTTACATTGTTGCATCCTATGAGTTAGGTGATGCAACTAACAATTATAATAAGATGAAGACATATTTGGGTAGGCCTTGGAAAGAGTATTCAAGGACAGTTTATATGCAAAGTTTTATAGATAAGTTAATTGATCCAAAGGGTTGGATGGAATGGTCTGGGAATTTTGGTTTAAGCACATTGTATTATGCAGAGTTTGGTAACTGGGGGCCAGGTTCAAACACTAGTAAAAGGGTCACATGGGAAGGGTATCATCTTATAAATGGAAATGATGCAGATCATTTCACTGTGTATAAATTCATACAAGGTGATACGTGGCTGCCCATGACAGGAGTGCCTTTCAAAGCTGGGTTACATTAA 1611 0.3724 MARMPNYRFLSIHQTTLYTLVSFFILFISPSLSSFSFSPNTTCNLTPYPTFCTTTLPPQYLSIHDQCHFFLIQSLSITKTIIEEVSSYLRDQSYIHVSTTHALEDCLNLAQLNIDFLSNVLQAIENTVTNYQAYNFQTMLSAILTNQNTCLDGFHEVTPYPRITTALLNSLSDGIKLYSISLALFTHGYVSGHGTGKLTFERKLLQNTSIDNNVVVREKVVVNLDGSRDFTTINDAVEAAPNNTGTNNGYYVIYVVTGVYYEYVSIAKSKQNVMIVGDGINRTVITGNRSVIDGWTTFQSATFAVVGEGFVAVNISFRNTAGSNKHQAVAVRNGADMSTFYNCNFEGYQDTLYTHSFRQFYKNCNIYGTIDFIFGNSAAIFQDCFMYPRLPMQNQFNAITAQGRTDPNQNTGMCIQNCYIVASYELGDATNNYNKMKTYLGRPWKEYSRTVYMQSFIDKLIDPKGWMEWSGNFGLSTLYYAEFGNWGPGSNTSKRVTWEGYHLINGNDADHFTVYKFIQGDTWLPMTGVPFKAGLH* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0332 536 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
Lan8g0332 536 SMART PMEI_2 34 184 IPR006501 GO:0004857
Lan8g0332 536 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 185 IPR006501 GO:0004857
Lan8g0332 536 Pfam Pectinesterase 220 521 IPR000070 GO:0030599|GO:0042545
Lan8g0332 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 187 IPR035513 -
Lan8g0332 536 SUPERFAMILY Pectin lyase-like 218 534 IPR011050 -
Lan8g0332 536 CDD PMEI-like_3 41 187 - -
Lan8g0332 536 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 26 534 - -
Lan8g0332 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 187 IPR035513 -
Lan8g0332 536 Coils Coil 107 127 - -
Lan8g0332 536 Gene3D - 217 536 IPR012334 -
Lan8g0332 536 PANTHER PECTINESTERASE 26 534 - -
Lan8g0332 536 Pfam Plant invertase/pectin methylesterase inhibitor 40 184 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0332 Lan-Chr8 5356012 5359196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0332 20 535 Carbohydrate Esterase AT4G02330 48.148 3.77e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0332 K01051 - gmx:100810329 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g1041 16 17624771 17631541 Lan8g0332 8 5356012 5359196 PCT