Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0331 ATGGATAGTTGGGGAGATGCAGATAAGAAAAAGAGAATTGCCATTATTAGTGTATGTACATTCTTAATTGTGGCTTTAGTTATGGCCACCTCAATTGTTTTGAGTATCAAGCAAAACGAAAATAGTTCCAAAGATTATGATCATAACAAGACCCATGCAGTTTCTACAATGAAAGTAATTAATATCCTTTGTCAACCCACTGATTACAAGAAAGAATGTGAGGAAAGTCTCAAAGCAGAAGCTAACAACACCACAGACACAAGAAAACTCATTCAGATTGCTTTCAATATAACCATTAAGAGAATTGGTAATGGTATCAAGAAAACTAATCTCATGCATGAGGTTGAGAAGGATCATAAAGCAAAGATGGCACTTGATACATGTAAGCAACTTATGGATCTTTCAATCAATGAGTTTAATAGGTCACTTGAGAGAATAAGAAGGTTTCATATTAATGATTTTGATAACATTCTCACAAGCTTGAAGGTTTGGTTAAGTGGTGCAATCACATACCAAGAAACTTGCTTGGATGGTTTTGAGAATATCAATAGTGAAGTTGGTGAGAAGATGAGAGATGTGTTAACAAAATCCATGCAAATGAGTAGCAATGCCCTAGCTATAATCTATGGATTATCAAAAACTCTTTCTGATGTGAATGGCTCAAATGTTGCTGCACGTGGCTTGATTCAAGGTTTTGAGGATCAACAAGTTCTCAATCATGATGAGTTGCATCCTTCTTGGGTTGATGGAGGTAGTGCTGTTAGGATACTCCTCCATACAAACTTAGATAACCTCAAGCCTCATGTGGTTGTAGCCAAAGATGGGAGTGGGAAATTCAAGAGGATCAATGAGGCATTGAAAATGGTGCCTAAGAAGAATCAAAAGCCATTTATAATCTACATCAGGAAAGGTGTTTACCATGAATATGTTGAAGTTACCAAGCAAATGACTCATGTTGTGTTTGTTGGTGATGGTAGGAAGAAGACTCGAATTACAGGCAACAAAAACTTCATAGATGGGATTAACACTTATAGAACCGCCACAGTTGTTATTCAAGGAGATTATTTTGTTGCAATGAATATGGGGTTTGAGAACTCAGCTGGCCCTCACAAACATCAAGCAGTAGCCATAAGAGTGCAAGCAGACAAATCCATCTTTTACAAATGCTCATTTGATGGATACCAAGACACTCTTTATGCTCACACCCATCGTCAATTCTACAAGGATTGCACCATTTCAGGCACCATTGACTTCATTTTTGGTGATGCAATAGCTGTTTTCCAAAACTGCACTTTCATACTCAGAAAGCCATTGAAAACCCAAAATTGCATTGTGACCGCACAAGGTAGAAAAGAGAGGTATCAACCATCAGGAATAGTCATACAAGGAGGTTCCATTGTGTCCTCCCGTGAGTACCACTCAGTGAGGTTCAAGAACAAAACCTACTTAGCTCGTCCTTGGAAGAATAACTCGAGAACCATTTTCATGGATACTTACATTGATGATATGATTCAATGTAATGGTTATGTGCCATTGCAAGGACCAAAGGGTACATTTTCTAGTAAGGATACATGCTTATATGCTGAGTACAATAATATTGTCCCTGGTAAAAACAAATCTAAGCTTGGAAAATGCAATGGGATCAAGAAACTCACAAAACAATCAGCAAGTAGTTTCTTACCTTCCAAGTTTTTTCATGAAGATGATTGGATTAAGGTTACTAGGATTCCTTACCAATCTGGCATGGCCTCTACTAAGCACTAA 1764 0.3759 MDSWGDADKKKRIAIISVCTFLIVALVMATSIVLSIKQNENSSKDYDHNKTHAVSTMKVINILCQPTDYKKECEESLKAEANNTTDTRKLIQIAFNITIKRIGNGIKKTNLMHEVEKDHKAKMALDTCKQLMDLSINEFNRSLERIRRFHINDFDNILTSLKVWLSGAITYQETCLDGFENINSEVGEKMRDVLTKSMQMSSNALAIIYGLSKTLSDVNGSNVAARGLIQGFEDQQVLNHDELHPSWVDGGSAVRILLHTNLDNLKPHVVVAKDGSGKFKRINEALKMVPKKNQKPFIIYIRKGVYHEYVEVTKQMTHVVFVGDGRKKTRITGNKNFIDGINTYRTATVVIQGDYFVAMNMGFENSAGPHKHQAVAIRVQADKSIFYKCSFDGYQDTLYAHTHRQFYKDCTISGTIDFIFGDAIAVFQNCTFILRKPLKTQNCIVTAQGRKERYQPSGIVIQGGSIVSSREYHSVRFKNKTYLARPWKNNSRTIFMDTYIDDMIQCNGYVPLQGPKGTFSSKDTCLYAEYNNIVPGKNKSKLGKCNGIKKLTKQSASSFLPSKFFHEDDWIKVTRIPYQSGMASTKH* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0331 587 CDD PMEI-like_3 63 213 - -
Lan8g0331 587 Pfam Pectinesterase 268 566 IPR000070 GO:0030599|GO:0042545
Lan8g0331 587 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Lan8g0331 587 Pfam Plant invertase/pectin methylesterase inhibitor 60 207 IPR006501 GO:0004857
Lan8g0331 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 213 IPR035513 -
Lan8g0331 587 PANTHER PECTINESTERASE 12 583 - -
Lan8g0331 587 SMART PMEI_2 55 207 IPR006501 GO:0004857
Lan8g0331 587 Gene3D - 262 582 IPR012334 -
Lan8g0331 587 SUPERFAMILY Pectin lyase-like 266 580 IPR011050 -
Lan8g0331 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 209 IPR035513 -
Lan8g0331 587 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 211 IPR006501 GO:0004857
Lan8g0331 587 PANTHER PECTINESTERASE 12 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0331 Lan-Chr8 5352778 5355697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0331 6 582 Carbohydrate Esterase AT3G05610 43.847 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0331 K01051 - gmx:100794799 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0894 4 10877598 10886844 Lan8g0331 8 5352778 5355697 PCT
Lan2g0276 2 2358441 2361513 Lan8g0331 8 5352778 5355697 PCT