Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0322 ATGGATGGCAACAAATTTTCTTCCGACCAAGTCATTGCAGAAATGCTTGAAATGGGTTTTGAGCATTCGAGCATTGTTGAAGCCATAAAAGTTGTGGGCCCATCCATTACCAGTGTTGTTGATCATATCTTGAATGGTGCTAGTGTTGGAAGTAGAACTAACTGTGAAGCATCATCATCCACTAGTACTGCTATCAACTCCAAAATTCATGCAAATAATGGGGAAGTTTTAAAAAAGAGAACTTTCCGGTCATCTGGTCAAGTTCGGCAATCGAGGATACTCGACCATTTCCAACCCACCAATGATAAAGTCAAAGAGAGCAAGAAGAGTCATGTAGCTGTGGATGCAGTTCGCAATGGGGAAGAGCATAAGGAGCCTTTTTCTCAAGTGGTAGTTGATCCCTGTGTGATGTCGGGGTCAGTTGTAGTGGATTCTGAGGATGATTTGGATATTGCATATGATTGGGAGAAGAAAGCTCACATTATCTTGCAAAAGCATTTTGGTTTTTCATCATTGAAGAGTTTTCAAAAGAAGGCTTTGAATGCTTGGTTTGCACATAAAGACTGTCTTGTCCTGGCTGCAACAGGATCTGGGAAATCTCTATGCTTTCAGCTTCCTGCATTATTGACCGGGAAAGTGGTGGTTGTGATTTCACCCTTAATAAGCCTGATGCATGATCAGTGCTTAAAGCTAGCAAGACATGGAATCAGTGCTTGCTTTCTCGGGTCTGGGCAACCTGACAATACTGTTGAACAGAAAGCTATGAGAGGCATGTATAGTATAATTTATGTTTGCCCGGAGACCATCCTGAGATTGATTATACCACTGCAGGAGCTTGCAGAAAGTCGTGGTATTGCTTTATTCGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGACTACAGACGTCTGTCTATGCTGAGGGAAAAATTTAATACCAGCAAGTTGAAGTCCCTGAAATTTGATATACCTCTGATGGCCTTGACTGCCACAGCTACAAAGAAAGTTCGTGAAGATATTTTGAAGTCATTGTGCTTGTCAAAAGATACTAATGTTGTACTTACGTCATTTTTTCGATCTAATTTACGCTTCACGGTAAAGCATAGTAGAAAGTCACTGGCTTCATATGACAAAGATTTTCATGAATTGATTGAAATATATGGTAGAAAGCAATATACTGATGAAAATAAAAGAGATATCATGTCAAAGGATTCAGATAATGTTTCCAACTCTGACACAGACGGTGATTCTCCTTATGATAAGGATGACAACCAAGACGATTATGCTGATAGAGATATTAATGTAGCGGACTCAGGAACCAGGGAAAATATTAGAAAGGGGAAAGAATTGTCAGTTGAGTTCCTTGAAAATGACATTGATGACTTTCAAAGTGTTGATGACTGGGATGTTACCTGCGGTGAATTTTGTGCACAACCTCCTCCCAATGAATGGGAATCATCTGAGATAATTGATCCACCCAAGAAACCAGGAGGAAGACTTAGAATTCTTAAAGAACCTGTGCAAAAAGGACCAACAATCATATATGTACCCACCAGAAAAGAAACAGTGAAAATTGCAAATTATCTATGCAAGTTTGGCGTGAAGGCTGCGGCTTATAATGCAGGGCTTCCAAAATCACATCTTAGAAGGGTTCATAAGGAGTTTCATCAAAATAATTTAGAGGTTGTTGTTGCAACAATTGCATTTGGAATGGGGATTGACAAACCAAATGTTAGAAGAATCATCCACTATGGTTGGCCGCAGAGCTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGAAAATTAGCTGATTGCATTCTATACACAAACCTAGCAAGAATACCATCACTTTTGCCAAGTAGTAGAAGTGAAGATCAAACAAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCTAAGATACTTGTCGAGTACTTTGGAGAGGATTTCGGTTGTCAGAAGTGTCAGCTATGTGATGTGTGTGTTGATGGACCGCCTGAAAGTCAGAATTTGAAAGAGGAGGCAAGTATTTTACTACAAACTATAGCTGCCGAATATGCACGTAGCTATTCCATGGATGACCCGTATGATGACAGTATATATTTTGACTCGGAAAATAGAAGATTTGGAGAGAGGTCAAGTCTTAAGATGTTTGTTGGAAAGATAAACGAGCAGTCTCCGAAGTTTTTAACCACTGCTATATTATGGTGGAGAGGTCTTGCTCGAATTCTGGAAGTTAAAGGATACATTAGGGAGGGAGATGAGAAGACCCATGTTCTGATAAAATACCCGGAGCCAACAAAATTAGGATTGGAATTTGTGAAGTCAGTAACTGAACAAGATTTCTATGTTTACCCAGAGGCAGATATGTTGCTTGCAAAGGAAACTGCTAATAAGCCATATTCCTCATTCTCAGAATGGAAAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGTCTGGAACAAAGGCAAATAAAAAAGACAACGAAGTTTCGCAAACCCAGAAAGAAACGAAAGAGGAACGCTGATAAAGTGCAACCTGATCTGAGGACTTCACGAGGTAGACTGTCAGCAAAACTTGCAAAAAAATAA 2655 0.4011 MDGNKFSSDQVIAEMLEMGFEHSSIVEAIKVVGPSITSVVDHILNGASVGSRTNCEASSSTSTAINSKIHANNGEVLKKRTFRSSGQVRQSRILDHFQPTNDKVKESKKSHVAVDAVRNGEEHKEPFSQVVVDPCVMSGSVVVDSEDDLDIAYDWEKKAHIILQKHFGFSSLKSFQKKALNAWFAHKDCLVLAATGSGKSLCFQLPALLTGKVVVVISPLISLMHDQCLKLARHGISACFLGSGQPDNTVEQKAMRGMYSIIYVCPETILRLIIPLQELAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSMLREKFNTSKLKSLKFDIPLMALTATATKKVREDILKSLCLSKDTNVVLTSFFRSNLRFTVKHSRKSLASYDKDFHELIEIYGRKQYTDENKRDIMSKDSDNVSNSDTDGDSPYDKDDNQDDYADRDINVADSGTRENIRKGKELSVEFLENDIDDFQSVDDWDVTCGEFCAQPPPNEWESSEIIDPPKKPGGRLRILKEPVQKGPTIIYVPTRKETVKIANYLCKFGVKAAAYNAGLPKSHLRRVHKEFHQNNLEVVVATIAFGMGIDKPNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYTNLARIPSLLPSSRSEDQTKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFGCQKCQLCDVCVDGPPESQNLKEEASILLQTIAAEYARSYSMDDPYDDSIYFDSENRRFGERSSLKMFVGKINEQSPKFLTTAILWWRGLARILEVKGYIREGDEKTHVLIKYPEPTKLGLEFVKSVTEQDFYVYPEADMLLAKETANKPYSSFSEWKKGWADPEIRRQRLEQRQIKKTTKFRKPRKKRKRNADKVQPDLRTSRGRLSAKLAKK* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0322 884 Gene3D - 621 801 IPR036388 -
Lan8g0322 884 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 2 874 - -
Lan8g0322 884 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 505 648 IPR001650 -
Lan8g0322 884 MobiDBLite consensus disorder prediction 421 446 - -
Lan8g0322 884 Pfam DEAD/DEAH box helicase 175 343 IPR011545 GO:0003676|GO:0005524
Lan8g0322 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 236 IPR027417 -
Lan8g0322 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 621 IPR027417 -
Lan8g0322 884 Gene3D - 497 619 IPR027417 -
Lan8g0322 884 Gene3D - 138 364 IPR027417 -
Lan8g0322 884 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 356 IPR014001 -
Lan8g0322 884 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 162 377 IPR004589 GO:0004386|GO:0006310
Lan8g0322 884 MobiDBLite consensus disorder prediction 843 884 - -
Lan8g0322 884 Pfam Helicase conserved C-terminal domain 507 609 IPR001650 -
Lan8g0322 884 SMART helicmild6 529 610 IPR001650 -
Lan8g0322 884 SMART ultradead3 168 373 IPR014001 -
Lan8g0322 884 CDD DEXHc_RecQ 162 363 - -
Lan8g0322 884 Pfam RecQ zinc-binding 626 681 IPR032284 -
Lan8g0322 884 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 874 - -
Lan8g0322 884 MobiDBLite consensus disorder prediction 403 446 - -
Lan8g0322 884 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0322 Lan-Chr8 5285598 5292333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0322 518 610 Eukaryotic Initiation Factors Gene Family AT5G11170 26.882 2.78e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0322 K10900 - gmx:100793222 1194.49