Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0317 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCCACAGAGAATACAAGAGAAGATGCAGTTAAACAACAATTAGAGATACTTGGTCAGTTCAATAGTCCTCATTCTCATACAACAACAAATAATAATAGTAATGTTTCCAACACAAGTTTACAGCAACCTCCTTCTGCTAAGAGGAAAAGGAGCCTCCCAGGAAATCCAGATCCAAAAGCTGAAGTCATAGCTCTATCACCAAACGCACTAATGGCCACAAACAGATTCTTATGTGAAATCTGCAATAAAGGGTTCCAAAGAGACCAAAACCTTCAATTGCACCGACGAGGCCATAATTTACCATGGAAACTTAAACAGAGAACAAGCACAGAAATTATAAAAAGGGTTTATGTTTGTCCTGAACCTTCATGTGTGCACCATAATCCAGCAAGAGCATTAGGTGATCTTACTGGCATTAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAAATCTGTGGTACAAGGGAGTACAAATGTGACTGTGGCACCCTCTTTTCAAGAAGAGATAGCTTCATTACCCACAGAGCTTTCTGTGATGCACTGGCTGAGGACAACAAAGGCAATGAAGAACAATTGTCAAAGATGGGTTCAAACTTGCAATGCCAACCAATGCCAAATTTGGTTCCCTCATTACCAATCAATACCAACATAATCCCCAACCCACAAGTTGGAGGGACAACATCAGAATTCAACAACCATTCAGATCAAAGGCATAATCCATTATCATCACTGCCAAATCCTGCAACTTCAAAACCCTTCAACAATAATATGGAAATGAGGAACACTTGTCCCTCTCTTCATCTGAGTTCAAACCTTTTAGCTTCTCATGAAGGCTCATCACTCATGTCTGCCACTGTGTTGCTGCAAAAGGCTGCTCAAATGGGTGCAACTCTGAGTAATAATAATAGCAACATTGCTACAACCATGGCACCACTATCATTTGGTAGTATGGTGCAATTGCAACAACAACAACAACCAGATAGTGTTCACTCCTTCATGAACCACTACATGCAACAACAACAACAGGATCATGTTTCATCTCAGTATAATAATTTCAATGCAAATCATGATATGAGTACCGGTGATAATGAAGGTAGTGTTGCTGGAATGAATGGTGTGGATATGTTTAATGTTATATATGATCAAAGTAAGGCGTTGTCAAAGATCATAGAGCAGAATAATAGAAGCATAAACAGTGGAGTTTTGCATCAAAAAAATGGTGGGTCAAGTAGTGGTGCAACTAGCATTGGTGGAAGTAAAGGAAGTGGTGATGTAATGACTCTAGATTTGTTGGGAACTGGAGGTGGTGGTGATAGGAATTTGAATATCTATGATGGTGCACAACATGCTGAAACTTCTGCAGAAGATGAGGTTTGGAGAAATTGGTCAAACAAGAATGAGGACTTTGAATCATTTTCAGCATCTAGCAGCATGTGA 1539 0.3938 MSNITSCDSGSFSTENTREDAVKQQLEILGQFNSPHSHTTTNNNSNVSNTSLQQPPSAKRKRSLPGNPDPKAEVIALSPNALMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIIKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEDNKGNEEQLSKMGSNLQCQPMPNLVPSLPINTNIIPNPQVGGTTSEFNNHSDQRHNPLSSLPNPATSKPFNNNMEMRNTCPSLHLSSNLLASHEGSSLMSATVLLQKAAQMGATLSNNNSNIATTMAPLSFGSMVQLQQQQQPDSVHSFMNHYMQQQQQDHVSSQYNNFNANHDMSTGDNEGSVAGMNGVDMFNVIYDQSKALSKIIEQNNRSINSGVLHQKNGGSSSGATSIGGSKGSGDVMTLDLLGTGGGGDRNLNIYDGAQHAETSAEDEVWRNWSNKNEDFESFSASSSM* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0317 512 MobiDBLite consensus disorder prediction 1 72 - -
Lan8g0317 512 SMART c2h2final6 129 159 IPR013087 -
Lan8g0317 512 SMART c2h2final6 164 184 IPR013087 -
Lan8g0317 512 SMART c2h2final6 88 110 IPR013087 -
Lan8g0317 512 MobiDBLite consensus disorder prediction 1 19 - -
Lan8g0317 512 Gene3D Classic Zinc Finger 85 185 - -
Lan8g0317 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Lan8g0317 512 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 2 489 - -
Lan8g0317 512 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 489 - -
Lan8g0317 512 MobiDBLite consensus disorder prediction 434 454 - -
Lan8g0317 512 MobiDBLite consensus disorder prediction 257 282 - -
Lan8g0317 512 MobiDBLite consensus disorder prediction 27 60 - -
Lan8g0317 512 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Lan8g0317 512 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0317 Lan-Chr8 5262342 5266757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0317 46 333 IDZ Gene Family AT3G50700 54.985 4.95e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan8g0317 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0317 - - lang:109354363 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0317 8 5262342 5266757 Lan4g1297 4 21718874 21724758 LSH
Lan8g0317 8 5262342 5266757 Lan4g1295 4 21666018 21669970 LSH