Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0316 ATGGACAAGAATGAGCAAGATAGAACTTTGCCCATTGCAAATGTGGGAAGAATCATGAAGCAAATTCTTCCTCCTAGGGCAAAGATCTCCAAAGAAGGGAAACAAGTAATACAAGAGTGTGTGACAGAGTTCCTTAGTTTTGTGACTGGTGAGGCATCTGAAAAGTGTTACAAGGAGAACCGCAAGACTATCAATGGGGATGACATTTATTGGGCTTTAGGGTCCTTAGGTTTTGATAACTATTCTGAGGCCATAGGAAGGTACTTGCATAAATATAGGCAGAATGAAAGGGAGAAAGTGAAACAACATAAGAAGTTTGAGAGTGCCAAATATCAACTGAGCTATGAAGGATCAACACCAAAAACAAGCAGACAACATGAGAATCAATCTGGATGA 396 0.399 MDKNEQDRTLPIANVGRIMKQILPPRAKISKEGKQVIQECVTEFLSFVTGEASEKCYKENRKTINGDDIYWALGSLGFDNYSEAIGRYLHKYRQNEREKVKQHKKFESAKYQLSYEGSTPKTSRQHENQSG* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0316 131 MobiDBLite consensus disorder prediction 112 131 - -
Lan8g0316 131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Lan8g0316 131 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Lan8g0316 131 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lan8g0316 131 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lan8g0316 131 Gene3D Histone, subunit A 1 131 IPR009072 GO:0046982
Lan8g0316 131 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 120 - -
Lan8g0316 131 SUPERFAMILY Histone-fold 6 116 IPR009072 GO:0046982
Lan8g0316 131 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan8g0316 131 MobiDBLite consensus disorder prediction 99 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0316 Lan-Chr8 5241279 5241973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0316 5 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 70.000 1.13e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan8g0316 CBFD_NFYB_HMF 9.9e-24 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0316 K08065 - gmx:100815151 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0316 8 5241279 5241973 Lan20g0649 20 5137323 5137929 LSH