Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0307 ATGGATCATCAAGGTCACAGCCAGCACCCATCTATGGGCGTTGTTGGTAGTGGAGCACAAATGGCATATGGTTCAAATCCATACCATCCCAACCAAATAACTGGATCACCTGGCTATGGGACCATTCAATCCACCGGTCAACCAGCCGGAGCTCAGCCGGGACAAAACCAACTGGCTTATCAGCATATTCATCAGCAACAACAACAGCTACTTCAGCAACAGCTCCAAACCTTTTGGGCAAACCAACACCAAGATATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATCATGAAGGCAGATGAGGATGTTCGAATGATATCGGCCGAGGCACCTGTCATATTTGCAAGGGCGTGTGAGATGTTTATATTAGAGTTAACCTTGCGTTCTTGGAACCATGCCGAAGAAAACAAAAGGAGAACTCTTCAAAAGATTGACATTGCAGCAGCTATCAATAGGACCGATATCTTCGATTTCTTGGTTGACATTGTGCCTAGAGAGGACTTGAAAGATGAAGTGCTTGCATCAATGCCAGGGGGAACAATGCCTGATACAGGAGGTCCTGCTGATGGTCTTCCTTATTGCTATATGCCACCTCAACATGCACCTCAAATTGGAGCTCCTGGTGTCATGATGGGTAAGCCTGTGATGGACCCTAATATATATGCTCAGCAGTCTCATAATCCCTACATTGCACCACAAATGTGGCCACAACCACCAGAGCAGCAACAATCATCTTCTCCAGATCACTAG 777 0.462 MDHQGHSQHPSMGVVGSGAQMAYGSNPYHPNQITGSPGYGTIQSTGQPAGAQPGQNQLAYQHIHQQQQQLLQQQLQTFWANQHQDIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHAEENKRRTLQKIDIAAAINRTDIFDFLVDIVPREDLKDEVLASMPGGTMPDTGGPADGLPYCYMPPQHAPQIGAPGVMMGKPVMDPNIYAQQSHNPYIAPQMWPQPPEQQQSSSPDH* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0307 258 MobiDBLite consensus disorder prediction 24 55 - -
Lan8g0307 258 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 255 - -
Lan8g0307 258 SUPERFAMILY Histone-fold 43 168 IPR009072 GO:0046982
Lan8g0307 258 MobiDBLite consensus disorder prediction 235 258 - -
Lan8g0307 258 Pfam Core histone H2A/H2B/H3/H4 57 159 IPR007125 GO:0003677
Lan8g0307 258 Gene3D Histone, subunit A 58 174 IPR009072 GO:0046982
Lan8g0307 258 Coils Coil 258 258 - -
Lan8g0307 258 MobiDBLite consensus disorder prediction 1 55 - -
Lan8g0307 258 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0307 Lan-Chr8 5171351 5173713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0307 1 244 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.633 1.74e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan8g0307 Histone 2.5e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0307 K08066 - gmx:100527803 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0307 8 5171351 5173713 Lan20g0661 20 5225634 5227978 LSH
Lan4g0867 4 10544194 10547236 Lan8g0307 8 5171351 5173713 PCT
Lan2g0298 2 2529249 2531279 Lan8g0307 8 5171351 5173713 PCT
Lan16g1070 16 17859176 17862041 Lan8g0307 8 5171351 5173713 PCT
Lan8g0307 8 5171351 5173713 Lan4g0867 4 10544194 10547236 PCT
Lan8g0307 8 5171351 5173713 Lan2g0298 2 2529249 2531279 PCT
Lan8g0307 8 5171351 5173713 Lan16g1070 16 17859176 17862041 PCT