Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0305 ATGAACTTCAATCACAAAAAACAAAGCTATGAAAGTGGAAGCAGAATCATCATCTTCTGTTTTTTCTTTCTCCTTTTCACACCCCTTATCCTAGCACAAACCGATTCTAATAACAACAACCCAATCGACCCTTTTTTCAAACATTTCAGCCCCTCCGTAGCGATTGCAATGGCTATTCCCTTATCCGCTATTCTTCTAATGGGTTTCTTCACAATCTACACTCGTTACTGCGCTCATTCACCCTCCTACAACTTCGACAACTTTGCCAATGGAAGACGCTTCCGTGGAACGACACGTGGCCTCGACCCTTCCGTGATCGAAACATTCCCCTTTCTTGAATACTCCGTCGTGAAAATTCACAAGATTGGAAAATGCGATCTTGAATGTGCTGTTTGTCTCGACGAGTTTGAAGACACTGAAACGCTGCGTTTGATCCCCAAGTGTGACCATGTTTTCCACCCTCAGTGCATCGATGAGTGGTTTGAATCTCATACAACATGTCCCGTGTGTCGTGCAAATCTTGCTCCTCAACCAGCCGAGTTGGTTCATGTAAACCCGATCCTAATCACTCACCCGGAATGTATTGAACCACAAAATAACGTCGTTTTAACAATGTCAGAACAACAAGAAAGGGAGAGAAGTGAACAAACTAATGTTATTTTGATTAACCAGACGCTGAACCGGATCAGAACCAGAAGGTCGCGGTCGAACCGGAAGAGCCGGTTTCCAAGGTCTTACTCGACCGGGCATTCGATGGTTCAACCGCGTGAAAACACGGAGCGGTTCACTTTGAGATTACCTTTTGATGTGAGGGAGAAGATAATGCAAAACCCGAAATTGAATCGAGCGAGAAGTATGGTTACGTTACGTAGGGATAAATCAGACCCGTTTGTTTTCACCATGACGCCACCGTTCTTAGTAAGGGAATCATCGTTTAAAGCACTGAGAGTCACTAATAACGCCGTCGCGCCGCAGCAGCTGCCACAGCCAACAACCGTGGACTCGGCTTGCCTTCCAGTTTAA 1023 0.4555 MNFNHKKQSYESGSRIIIFCFFFLLFTPLILAQTDSNNNNPIDPFFKHFSPSVAIAMAIPLSAILLMGFFTIYTRYCAHSPSYNFDNFANGRRFRGTTRGLDPSVIETFPFLEYSVVKIHKIGKCDLECAVCLDEFEDTETLRLIPKCDHVFHPQCIDEWFESHTTCPVCRANLAPQPAELVHVNPILITHPECIEPQNNVVLTMSEQQERERSEQTNVILINQTLNRIRTRRSRSNRKSRFPRSYSTGHSMVQPRENTERFTLRLPFDVREKIMQNPKLNRARSMVTLRRDKSDPFVFTMTPPFLVRESSFKALRVTNNAVAPQQLPQPTTVDSACLPV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0305 340 MobiDBLite consensus disorder prediction 232 256 - -
Lan8g0305 340 SMART ring_2 129 170 IPR001841 -
Lan8g0305 340 MobiDBLite consensus disorder prediction 241 256 - -
Lan8g0305 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
Lan8g0305 340 PANTHER RING FINGER DOMAIN-CONTAINING 16 304 - -
Lan8g0305 340 SUPERFAMILY RING/U-box 119 177 - -
Lan8g0305 340 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 304 - -
Lan8g0305 340 CDD RING-H2_EL5_like 128 171 - -
Lan8g0305 340 Pfam Ring finger domain 128 171 IPR001841 -
Lan8g0305 340 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0305 Lan-Chr8 5140846 5141919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0305 22 335 Rapid Response to Elicitors AT3G05200 41.471 2.53e-77 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0305 K10664 - gmx:100810865 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0305 8 5140846 5141919 Lan20g0664 20 5251201 5252780 LSH
Lan8g0305 8 5140846 5141919 Lan4g1265 4 21290942 21292008 LSH
Lan4g0862 4 10515094 10516713 Lan8g0305 8 5140846 5141919 PCT
Lan8g0305 8 5140846 5141919 Lan4g0862 4 10515094 10516713 PCT