Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0279 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCCTTTGGTTCTGCTCTTCTTGTGAGACATAAGCATGAGAAGAAAAAGTATGTTCTGAAGAAGATTCGGCTTGCCCGCCAAACTGAGCGCTCTCGTAGATCTGCACACCAGGAGATGGAGCTCATCTCTAAATTGCAAAACCCATTTATTGTGGATTATAAAGACTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCCTGTTTCCCGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTAATGGCACTTGACTACTTGCACATGAACCACATTCTCCACCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATTCGTCTTGGTGATTTTGGACTGGCCAAAATTTTGTCTTCTGATGATCTTACTTCCTCTGTTGTGGGAACCCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACATCACATAAGCCAGCATTCAAAGCATTTGACATACAAGCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCTTTGCCAACAAAATATTCTGGTTCATTCCGAAGTCTTGTTAAAAGCATGTTGCGAAAGAATCCAGAGCTCAGGCCCAGTGCTGCAGAGCTGCTTGGGCACCCATTTCTTGAACCGTATGTTCATAAGGTCCATCTCAAAATCAATAGCCCCAGACGAAGTACATTACCTGTTCATTGGCCAGAATCCAACTATGTGAAGAAAACTAGGTTTGTGGATCCAGAAGATGATCCTATTCCCACCTATAGGGATAGGCGGTATTCTTTCTGCAATGGTCGGACTCTAAATCCTAGTGTGTCTGGAGCTGATCAAGATTCTGTATGCTCTACCCTAGAAATAGATTGTATTCCAGATCATATAAATCAAAGGTTATCAGAATTATGTGTTGGCGATAGCCATGAAGTGAAGTCAATTCATAAGCCTGTTTCCCCAACTTCTGGTGTTCCTAATACTACAAGGCCACCTCCATCTAAAGTTTCTGTCACCAAGAAGAAATCAATGGAATCCTCAAAAAGTCATAAAGTGCTCCCTGTTTCACGCAATACCACAAAATCTTCCCATACAAACCGCAGAGCATCATTTCCACTGCCAATGGGTGGTACTCAGCAGCCTTCCCGCAGGTCCAGTGTTGGTTTGCTTAGCCACGTGTCTTCGCCAGATATCTCAGTCAACTCTCCCCGTATTGATAAGATAGCTGAATTTCCGTTAGGATCATATGAAGATTCATTTTTTCCCATCAATAGAACATCAACATCTGCAGAAGGTTCTGCTGGCAACCCACCTCGTAGCAATCGTTCAACTATGGTAGACAAATGCACTGTAGAGGTATACGATAGACCTAGTTGTACAGATGCTTGGCAGGGAATCAAGCGCAGCATGCTAAAGGAAATCAATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTCCATCAAGCCACACCTCTTCAGACTTGCGCCGCCGACAATTTGACACTTCATCATACCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTAGAGTTTAGTGCAAGATTGCTCCAGCAGGCAAGGTATGACGAACTTGGGGTTTTGCTGAAACCATTTGGGCCTGAAAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCATCAAAGAGAACACTCTCAGCCCTGAAGAATCCCCATAA 1845 0.4314 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLQNPFIVDYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKILSSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQALINKINKSIVAPLPTKYSGSFRSLVKSMLRKNPELRPSAAELLGHPFLEPYVHKVHLKINSPRRSTLPVHWPESNYVKKTRFVDPEDDPIPTYRDRRYSFCNGRTLNPSVSGADQDSVCSTLEIDCIPDHINQRLSELCVGDSHEVKSIHKPVSPTSGVPNTTRPPPSKVSVTKKKSMESSKSHKVLPVSRNTTKSSHTNRRASFPLPMGGTQQPSRRSSVGLLSHVSSPDISVNSPRIDKIAEFPLGSYEDSFFPINRTSTSAEGSAGNPPRSNRSTMVDKCTVEVYDRPSCTDAWQGIKRSMLKEINEDKSGSSDQNATAGPSSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSIKENTLSPEESP* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0279 614 MobiDBLite consensus disorder prediction 364 384 - -
Lan8g0279 614 SUPERFAMILY Protein kinase-like (PK-like) 1 310 IPR011009 -
Lan8g0279 614 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Lan8g0279 614 CDD STKc_Nek 3 258 - -
Lan8g0279 614 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lan8g0279 614 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 599 - -
Lan8g0279 614 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lan8g0279 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lan8g0279 614 MobiDBLite consensus disorder prediction 519 549 - -
Lan8g0279 614 PANTHER SERINE/THREONINE-KINASE NEK4 1 599 - -
Lan8g0279 614 MobiDBLite consensus disorder prediction 393 444 - -
Lan8g0279 614 MobiDBLite consensus disorder prediction 359 444 - -
Lan8g0279 614 MobiDBLite consensus disorder prediction 524 540 - -
Lan8g0279 614 Pfam Protein kinase domain 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g0279 614 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan8g0279 614 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0279 Lan-Chr8 4850875 4857567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0279 10 258 MAP Kinase Kinase Kinase AT1G53570 32.283 1.08e-37 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lan8g0279 Pkinase 4.3e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0279 K08857 - gmx:100804898 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0279 8 4850875 4857567 Lan20g0697 20 5673686 5680664 LSH
Lan4g0840 4 10357390 10363103 Lan8g0279 8 4850875 4857567 PCT
Lan19g0605 19 11334044 11336915 Lan8g0279 8 4850875 4857567 PCT
Lan16g1114 16 18243454 18248964 Lan8g0279 8 4850875 4857567 PCT
Lan8g0279 8 4850875 4857567 Lan4g0840 4 10357390 10363103 PCT
Lan8g0279 8 4850875 4857567 Lan19g0605 19 11334044 11336915 PCT
Lan8g0279 8 4850875 4857567 Lan16g1114 16 18243454 18248964 PCT