Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0275 ATGGGTGGTAATGGGTCAGAGGGGTTGGGTGATGATTTCTTTGAGCAGATTTTAGCAGTTCCTGAAGCCTCTTATGGAAGGAGTTTAAGTGATGTTGGGTCCATGCAAATGGGGTTGCAATTGGGTTCCAATAATGGTGGTGATGTGTTGAGAGGTGAAGGGTCCTTAGGAATAAGGGTGGGTATGCCTTTGGGATTAAATTTAGAGCAAGGTGCATTTATGAGACACCAACAAGGTCATGATGTTGAGGGCAACATTACCAATAGTCATACTCATAATCAACATCATCAGCAACAACTCCTTCATCTTAATCACAATGGGAATAATAACAATAATAACACCTCTCAATCTTCCTCTTCTAATGCAGGAATCAATGATAAGGATATGCAAATGAGGGGTATGTTTTCAGGGTTTGGACAATTGCATAATCCTCCTCATACACATGCTCATGCTCAATCTATTCGCCCCACACTGTTATCTCCTCATCCACAACTCCATCACCACCATCAGCCCTTTCAAAGCCAGACACAACCACCAATGTCTGTTGCTGCTATGCCACAACATCCACCTGGCATCCGCCCTCGAGTGCGAGCTAGAAGAGGCCAAGCCACGGACCCTCATAGTATCGCTGAACGGTTGCGTCGCGAAAGAATCGCGGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGATAGAGCCATTATGCTTGATGAAATTATGGAATATGTGAAGTTCCTAAGGCTCCAAGTTAAGGTCCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCTCAGCTTGTGTCTGATGTTCCCTTTTCTGCTGTGGAGGGGGAGGACAATGATGGAGCAGATGAGCAAACATGGGAGAAGTGGTCAAATGATGGCACAGAAGAACAAGTAGCCAAACTTATGGAAGAAGATGTTGGGGCTGCAATGCAATTTCTTCAGTCTAAGGCACTTTGTATCATGCCTATATCTCTAGCCTCAACCATTTTTCGTATGCCTCAATCAGAACCATCATCACTCATCAAGCCTGAATCAAACAACTCATAG 1071 0.4472 MGGNGSEGLGDDFFEQILAVPEASYGRSLSDVGSMQMGLQLGSNNGGDVLRGEGSLGIRVGMPLGLNLEQGAFMRHQQGHDVEGNITNSHTHNQHHQQQLLHLNHNGNNNNNNTSQSSSSNAGINDKDMQMRGMFSGFGQLHNPPHTHAHAQSIRPTLLSPHPQLHHHHQPFQSQTQPPMSVAAMPQHPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAIMLDEIMEYVKFLRLQVKVLSMSRLGGAGAVAQLVSDVPFSAVEGEDNDGADEQTWEKWSNDGTEEQVAKLMEEDVGAAMQFLQSKALCIMPISLASTIFRMPQSEPSSLIKPESNNS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0275 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Lan8g0275 356 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 343 - -
Lan8g0275 356 SMART finulus 208 257 IPR011598 GO:0046983
Lan8g0275 356 MobiDBLite consensus disorder prediction 159 187 - -
Lan8g0275 356 MobiDBLite consensus disorder prediction 134 153 - -
Lan8g0275 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 343 - -
Lan8g0275 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 261 IPR036638 GO:0046983
Lan8g0275 356 MobiDBLite consensus disorder prediction 83 127 - -
Lan8g0275 356 Gene3D - 197 259 IPR036638 GO:0046983
Lan8g0275 356 Pfam Helix-loop-helix DNA-binding domain 207 251 IPR011598 GO:0046983
Lan8g0275 356 MobiDBLite consensus disorder prediction 167 182 - -
Lan8g0275 356 MobiDBLite consensus disorder prediction 83 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0275 Lan-Chr8 4820649 4825996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0275 168 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 70.526 1.58e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0275 HLH 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0275 - - lang:109355094 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0275 8 4820649 4825996 Lan20g0706 20 5738510 5743391 LSH