Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0274 ATGGTTGGAGGAAGAGTTGTGAAAGTGAAGAGAGATACGCTACGAGCATGCATGACATGCCCTCTTTGTCATAAACTCTTCAAATATCCTACTACTATCTCTCTCTGTCTTCATACTTTTTGCAGGAAGTGCATATATGAGAAATTCTCGGATGAGGAGGTGGATTGCTGTCCAGTGTGCAATATTGATCTGGGCTGCCTTCCAGCCGAAAAACTCAGGCCAGATCATAATTTGCAAGACATAAGGGCAAAAATATTCCCTTTTAAAAAGAAAAATATTAAGACTCCAGAAGTTGTATCTTCAATATCCCTGCCTGCAAAGAGGAAGGAAAGATCGCTTTCATCATTGGTGGTTAGTGCTCCGAAAGTTTCGATGCAAACTGGCTTTACTGGAAAGAGAACAAAAACCGGTACAAGAAAGGCTACTGCTTTACGTGGATGCAGTTTTATTCTTGAAGAAACCATAAAGAAGGAAACAACGTGTGAAGATAATATGGATTCTTCTGCGGCTGAACCTTCTAAAAAACATAAGCCTGATGAAGATATAGATGACAGTGTAGAACTTACAGAAGGGAAGGCTGATCTATGGACACCATTGAACTGTCTTGTTGAAGCTGCCAATAGAACAAAGTTCTATAGGTCAAATTCACATGCAACTCCTTCTTCCAAACTAGATTCTCCAACTACTCCTCGTGGCGATGTTGATATGTCTACAAATGCAAACAATCCAGAGCTACCTGCTTCTGTCGACAGTGAATTAAGCATTTCTAAAACCAAAAATAAGGATAATGGACATAAAACAAAATTTGGAGATGACAAGGATGGAAGTAGCTTGCCGTCAAGACCAGTGAAGCGAAAGAGGTTGCGTCCTTCTGGTCAGAAAAGAGTTGAAGCATCTGAGATGTCTGCCTCAGCTCAAGTCGCGCTAGATGCTTCAAAGGGGAAGTACAACAGAAAAAACAGTCCCATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCCTGCCACAGATCTCAGCATGTTACTTGAGAATAAAGGATGGCACTGTACCTGTCTCGTTTATTCAAAAGTACCTTGTGAAGAAACTTGATCTTGCCAATGAAGCAGAGGTGGAAATAATGTGCCGCGGTCAGCCAGTGCTCCCATCTCTGCAACTGCATAACTTAGTAGATCTATGGTTCCGGACTGCATCAACCTCAAAAAAGATACCAGCATCGGTCGGGTCCTCGGCTAAGGATTTTGTGATGGTTTTATCATATTGTAGAAAGCCCTTGCCTACTTGA 1296 0.4182 MVGGRVVKVKRDTLRACMTCPLCHKLFKYPTTISLCLHTFCRKCIYEKFSDEEVDCCPVCNIDLGCLPAEKLRPDHNLQDIRAKIFPFKKKNIKTPEVVSSISLPAKRKERSLSSLVVSAPKVSMQTGFTGKRTKTGTRKATALRGCSFILEETIKKETTCEDNMDSSAAEPSKKHKPDEDIDDSVELTEGKADLWTPLNCLVEAANRTKFYRSNSHATPSSKLDSPTTPRGDVDMSTNANNPELPASVDSELSISKTKNKDNGHKTKFGDDKDGSSLPSRPVKRKRLRPSGQKRVEASEMSASAQVALDASKGKYNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLDLANEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKPLPT* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0274 431 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Lan8g0274 431 SUPERFAMILY RING/U-box 14 85 - -
Lan8g0274 431 Pfam RING-type zinc-finger 20 51 IPR027370 -
Lan8g0274 431 SMART ring_2 20 60 IPR001841 -
Lan8g0274 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 112 IPR013083 -
Lan8g0274 431 MobiDBLite consensus disorder prediction 214 254 - -
Lan8g0274 431 MobiDBLite consensus disorder prediction 255 281 - -
Lan8g0274 431 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Lan8g0274 431 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 427 - -
Lan8g0274 431 Gene3D - 302 407 - -
Lan8g0274 431 MobiDBLite consensus disorder prediction 214 300 - -
Lan8g0274 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 427 IPR044807 GO:0004842
Lan8g0274 431 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0274 Lan-Chr8 4797324 4801887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0274 1 350 C3H Transcription Factor Family AT2G30580 43.817 4.11e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0274 K16277 - gmx:100783999 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0274 8 4797324 4801887 Lan20g0708 20 5770566 5775154 LSH