Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0271 ATGGCCGTCGCTACTCAAACCAAGCCCAAGAAAACGGTGCCGTCTAAGAAGCCTCTTTCCCACCCTCCCTTCGCTCAGATGATAACTGATGCGATTTCGAATCTGAAAGAGAGAACTGGTTCAAGCCAAATTGCGATCGCAAAGTTCATAGAGGAGAAGCATAAGGATTTACCTTCAACCTTCAAGAAGCTTCTTCTCCAAAATCTGAAGAGATCTGTTGCAGCTGGTAAACTCGTGAAGGTTAAGAACTCCTTCAAGCTTGCTCCTACCGTTAAGGCTTCAGTGAAAGCAGCTGCTGCTGATGTGAAGAAACCTAAAACTGTAGCTAAACCTAAAACCGTGGCAAAGCCAAAAACAGTGACTAAGCCTAAAACTGTCGCTAAGGCCAAAACTGTCGCTAAGCCTAAAGCTGCTGCAGCAACTAAAGCTAAGCCGAAAGCTGCTTTGAAATCAAAATCTGTTACCAAGCCTAAGGCGAAAGCTGTGGCTGCCGGCGCTAAGCCAAAGGCGAAGAGCGTGAAATCTCCGGCGAAGAAAGTGGCTGCTAAGGCAGTGAAGAAGGCGGCGGTGAAAAGTGTGAAAAAGGCGAAGAGTGTGAAATCGCCGGTGAAGAAAGTAGCTGCAAAGAAAGCAAGGAAGTGA 642 0.4704 MAVATQTKPKKTVPSKKPLSHPPFAQMITDAISNLKERTGSSQIAIAKFIEEKHKDLPSTFKKLLLQNLKRSVAAGKLVKVKNSFKLAPTVKASVKAAAADVKKPKTVAKPKTVAKPKTVTKPKTVAKAKTVAKPKAAAATKAKPKAALKSKSVTKPKAKAVAAGAKPKAKSVKSPAKKVAAKAVKKAAVKSVKKAKSVKSPVKKVAAKKARK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0271 213 MobiDBLite consensus disorder prediction 190 213 - -
Lan8g0271 213 Gene3D - 15 108 IPR036388 -
Lan8g0271 213 CDD H15 20 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan8g0271 213 MobiDBLite consensus disorder prediction 103 178 - -
Lan8g0271 213 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan8g0271 213 SUPERFAMILY "Winged helix" DNA-binding domain 17 98 IPR036390 -
Lan8g0271 213 PANTHER HISTONE H1 3 147 - -
Lan8g0271 213 PANTHER HISTONE H1 143 210 - -
Lan8g0271 213 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 147 - -
Lan8g0271 213 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 143 210 - -
Lan8g0271 213 MobiDBLite consensus disorder prediction 1 23 - -
Lan8g0271 213 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan8g0271 213 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan8g0271 213 PRINTS Histone H5 signature 112 126 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan8g0271 213 PRINTS Histone H5 signature 146 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan8g0271 213 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan8g0271 213 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan8g0271 213 PRINTS Histone H5 signature 168 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0271 Lan-Chr8 4783266 4784255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0271 7 87 Single Myb Histone (SMH) Gene Family AT1G72740 32.099 2.52e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0271 K11275 - gmx:100785055 125.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0271 8 4783266 4784255 Lan20g0712 20 5797478 5801094 LSH