Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0263 ATGTCTTCTTCATCTTATCCTGTTCTTCCTTATTCCTCGACTCGGGCTGCATCGGCGAAGTCCAACATCAGAAGTGCCGGGCACATGTTTTCAACACCTGCTAAATGCCCTGATGACATTCCTTTTTCGCCTGTCTCAGAAATACACTCTCCAACATTCATTTCTCACCCTCATGAAAGTGATGATATTTCATTTGAACCATATCCTTTTCAGGATCTTCTTCAGTTTCCTGATGGTGTTCCCGTCCACAACAATCAGGTGGAACATAGTGCTTCTTACATATCTGGTGACAATGCACAAACAACTGATATTGGGGACTGGATTGATGTAGAACCGTTAATTTCAGTTGACGTTGATGATTCTCTTCTCTCAAATTGGACTCAGCTTCTTGGTGATGATAATGTTGCAGAACCAAAGCCAAAGGAGTTCCAGGTTTCACAGCAACAGCATGGGCAATCTACAGAAGTTAATGCTCCTCCTAACTCAGTGTCAACCGCACCACAAACTAAATCAAGAATGCGTTGGAGTCAAGAACTTCATGAGGCATTTGTGGAAGCAGTCAATCAGCTTGGTGGCAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAAGCTGATGAAAGTTAAAGGCCTAACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGCCATCAGAAGGAACTTCCGAGAAAAGCTTGCCTGAAGTCGAAGAAATGAAGTGTCTAGACTTAAAAACGAGTAAGGGGATTACAGAAGCACTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCACGAACAACTTGAGATTCAAAGAGATTTACAAATTCAAATTGAAAAACAAGGGAAGCGTCTTCAAATAATGTTTGAGAAACAGGTAGAGATGGACAAGCCTTCTGCTTCAATATCAAGCATGGCGATAGCGCTGCCTTCACCTATTGACAATTTAGAAACCACAAATGAGGATCATGAGAAATTTCGAATAACCGTGCCCGAAGAAAGTACCCAGGACGCATGCACAAAGCAAAAGAGAGATGATGCTAAACATGAGCTGGGAGATGACCAGTTTTCTGCACAACTATTGAAACGGATGAAGAGTTTATGA 1125 0.4276 MSSSSYPVLPYSSTRAASAKSNIRSAGHMFSTPAKCPDDIPFSPVSEIHSPTFISHPHESDDISFEPYPFQDLLQFPDGVPVHNNQVEHSASYISGDNAQTTDIGDWIDVEPLISVDVDDSLLSNWTQLLGDDNVAEPKPKEFQVSQQQHGQSTEVNAPPNSVSTAPQTKSRMRWSQELHEAFVEAVNQLGGSEKATPKGVLKLMKVKGLTIYHVKSHLQKYRTARYKPEPSEGTSEKSLPEVEEMKCLDLKTSKGITEALRLQMELQKRLHEQLEIQRDLQIQIEKQGKRLQIMFEKQVEMDKPSASISSMAIALPSPIDNLETTNEDHEKFRITVPEESTQDACTKQKRDDAKHELGDDQFSAQLLKRMKSL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0263 374 Coils Coil 258 278 - -
Lan8g0263 374 MobiDBLite consensus disorder prediction 338 358 - -
Lan8g0263 374 Pfam MYB-CC type transfactor, LHEQLE motif 257 301 IPR025756 -
Lan8g0263 374 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 170 224 IPR006447 GO:0003677
Lan8g0263 374 MobiDBLite consensus disorder prediction 140 167 - -
Lan8g0263 374 SUPERFAMILY Homeodomain-like 168 224 IPR009057 -
Lan8g0263 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 373 IPR044848 GO:0003700
Lan8g0263 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 227 IPR017930 -
Lan8g0263 374 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 373 - -
Lan8g0263 374 Gene3D - 169 228 - -
Lan8g0263 374 Pfam Myb-like DNA-binding domain 172 223 IPR001005 -
Lan8g0263 374 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0263 Lan-Chr8 4648250 4651566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0263 47 323 G2-like Transcription Factor Family AT3G04450 50.333 7.70e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan8g0263 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0263 - - mtr:MTR_1g080330 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0263 8 4648250 4651566 Lan20g1007 20 10816458 10824041 LSH
Lan4g0477 4 7173325 7176714 Lan8g0263 8 4648250 4651566 PCT