Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0237 ATGGAATTTCACCCTGCAATTCATATCTACCAACAAGATGCACTACAGCAAATGAATTTGACATCTAGTGAAACAATGGAAGCTGGAACTTATCCACAGCGTCCTGGAGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCACCCTCCTAACAGGAAGCTGGCTATTGCAACGGCAAGGATGAAAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGTCAGTACTATTTGAAGACTGGAACTTGCAAATTTGGAGCTACATGCAAGTTTCATCATCCTAGAGACCAGGCTGGAATGTCTGGAAGAATTGCCTTAAATATTTTAGGCTATCCGCTTCGCCCTAATGAGCCTGAATGCACTTACTATTTAAGAACAGGACAGTGTAAATTCGGGAACACTTGCAAATTCCACCATCCTCAACCTAGTAATATGATGCTTTCATTAAGGGATTCTCCCGTTTATCCTACTGCTCAATCTCCAACTACACCAGGTCCACAGCCATATGCTGGAGGAATTGCAAATTGGTCAAGAACATCTTATATTGCTAGTCCACGCTGGCAAGGCCCTTCAAGTTACACACCTTTAATTCTACCTCAAGGAGTTGTTTCAGTGCCTGGTTGGAGTGCATACAGTGGTCAAATGGGATCAATCCCTACTTCAGATAATCCACAGCAAACAATAGGAAATGGTCAAACATATGGAACTTCTCGCCAAGATGAAGTAGCAAATGCAGGAACACACGGGGCATATACTCAATTCCGTTCTGGCTCTGTTCCTGTAGGGTTTTATGCGTTGCAGGGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTCGGAGCAGTCTGTCGGTTCCACCATCCACGTGAGAGGCTGGTTCCTGTTCCCGACTGCGTCTTGAGTCCAATTGGCCTTCCTTTACGTCCTGGAGAGCCATTGTGTGTCTTCTATTCGCGTTACGGCATATGTAAATTTGGCCCAAGTTGCAAGTTTGACCATCCAATGGGAATCTTCACCTATAATTTATCTGCATCGCCTTCCACCGAGGCCCCAGGCCGGCGTCTGTTAGGTTCTTCATCAGGAACAGCTGCATTAAATTTATCATCAGAAGGACATGCCGAGTCAGGCTCAGCAAAGCCCAGAAGGCTTTCAATATCAGAGACAAGACAGGTTCCTTCTGATGATGATGACATTGATGATGATGAGTGA 1281 0.4489 MEFHPAIHIYQQDALQQMNLTSSETMEAGTYPQRPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDQAGMSGRIALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRDSPVYPTAQSPTTPGPQPYAGGIANWSRTSYIASPRWQGPSSYTPLILPQGVVSVPGWSAYSGQMGSIPTSDNPQQTIGNGQTYGTSRQDEVANAGTHGAYTQFRSGSVPVGFYALQGENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLVPVPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNLSASPSTEAPGRRLLGSSSGTAALNLSSEGHAESGSAKPRRLSISETRQVPSDDDDIDDDE* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0237 426 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872
Lan8g0237 426 SUPERFAMILY CCCH zinc finger 38 62 IPR036855 GO:0046872
Lan8g0237 426 SUPERFAMILY CCCH zinc finger 335 359 IPR036855 GO:0046872
Lan8g0237 426 SUPERFAMILY CCCH zinc finger 290 316 IPR036855 GO:0046872
Lan8g0237 426 SUPERFAMILY CCCH zinc finger 128 153 IPR036855 GO:0046872
Lan8g0237 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 313 IPR000571 GO:0046872
Lan8g0237 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Lan8g0237 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 61 IPR000571 GO:0046872
Lan8g0237 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 152 IPR000571 GO:0046872
Lan8g0237 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 334 359 IPR000571 GO:0046872
Lan8g0237 426 MobiDBLite consensus disorder prediction 373 426 - -
Lan8g0237 426 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 425 - -
Lan8g0237 426 Gene3D - 284 369 - -
Lan8g0237 426 Gene3D - 81 163 - -
Lan8g0237 426 MobiDBLite consensus disorder prediction 373 397 - -
Lan8g0237 426 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lan8g0237 426 SMART c3hfinal6 79 106 IPR000571 GO:0046872
Lan8g0237 426 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Lan8g0237 426 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Lan8g0237 426 SMART c3hfinal6 332 359 IPR000571 GO:0046872
Lan8g0237 426 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Lan8g0237 426 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Lan8g0237 426 PANTHER PROTEIN PHOSPHATASE RELATED 10 425 - -
Lan8g0237 426 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Lan8g0237 426 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lan8g0237 426 Gene3D - 1 73 - -
Lan8g0237 426 ProSiteProfiles Zinc finger C3H1-type profile. 79 107 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0237 Lan-Chr8 4400166 4407037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0237 15 426 C2H2 Transcription Factor Family AT3G02830 59.005 1.06e-175 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan8g0237 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0237 - - lang:109354276 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0237 8 4400166 4407037 Lan20g0753 20 6233340 6240837 LSH