Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0236 ATGAAGACGACGATAACAGAGGATGGAAACGACGCCGTTCTAGTTGCACCACCAAACTTTTCAATGGTAGAAGATTGCATTTATCGCTCCAGTTTCCCTCAACCTTGCAATTTCCCCTTTCTTCAAACCCTAAATCTTCGATCCATAATATACTTGTGCCCTGAACCCTATCCGCCACAAAATTTGGATTTCCTTCAATCACACAATATTCAACTCTTTCAATTTGGAATTGAGGGCAAGACGGATCTTTCTGTATCTACTGGCCAGGATACTGTAATGGAGGCTCTCAAAGTTTTAATTGATGTGAGAAATCACCCGGTTTTGATTCACTGCAATCGAGGAAAGCATCGAACTGGTTGCCTTGTTGGTTGCTTGAGAAAATTTCAGAATTGGTGTTTGACTTGTGTGCTTGAAGAATATCAGAGATTTGCTGGTCCTAAATCCAGGACCACAGACTTGAAATTCATAGAGACTTTTGATACCCTAAGCTTGAGGCAGTGCCTTTACAGCATCATCTATAAATACCAAGGATATGCTTCCATGAAGCCACGCTTGATGTATAAAGATGACAATTTACAAAAGCCTCAATTAGCATCAGCATAG 603 0.4063 MKTTITEDGNDAVLVAPPNFSMVEDCIYRSSFPQPCNFPFLQTLNLRSIIYLCPEPYPPQNLDFLQSHNIQLFQFGIEGKTDLSVSTGQDTVMEALKVLIDVRNHPVLIHCNRGKHRTGCLVGCLRKFQNWCLTCVLEEYQRFAGPKSRTTDLKFIETFDTLSLRQCLYSIIYKYQGYASMKPRLMYKDDNLQKPQLASA* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0236 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Lan8g0236 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Lan8g0236 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Lan8g0236 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Lan8g0236 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 182 - -
Lan8g0236 200 Gene3D Protein tyrosine phosphatase superfamily 13 162 IPR029021 -
Lan8g0236 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 168 IPR020422 GO:0006470|GO:0008138
Lan8g0236 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Lan8g0236 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 182 - -
Lan8g0236 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 160 IPR029021 -
Lan8g0236 200 Pfam Tyrosine phosphatase family 14 162 IPR004861 -
Lan8g0236 200 CDD PFA-DSP_Siw14 14 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0236 Lan-Chr8 4386548 4388471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0236 6 200 Protein tyrosine phosphatase (PTP) family AT3G02800 65.641 1.85e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0236 K18045 - qsu:112008997 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0236 8 4386548 4388471 Lan20g0754 20 6244272 6246038 LSH