Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0192 ATGGACTTTGATCCAACCTTCTTAGACAAACTATATGACCTTCCTGGGGTTTTCTCTGAAAATACTACAAATTCGAAGATACCCATCATGGTTCCATTACAGCAAAATTCTACTCTTTTACCACCTCCATCAAATAACAACTTGTACAGCGAAAACAATTTCCATAATTTTCAACATCATCATTCCTTCAATATGATTCAAACCAACTCTTCAACTAGTGAATCATATGCTAATTGGTCTCAGAGAAATCTTGTCAACTCCAACTACTCCACTGAATTTGCACCAAACAATAACAAAATGGAAGCCACACATGGATACTTTAACAAATGCAAGGGGATATGGGATTCTCCCCGGGAAATTCCTATGCCGTATGATGCAATTTCACAGCCTCGGGTGGGTCCTTCTCTTCCACCAACACTACATGTCTATGAATCAATGGTGGTAAATTATAGGCCTCAAGAGAAGCTTTCACACATTACTGGAGCTGGGAATGGTTGTCAAGAAACTGATCAGAATATTGTTATTGGTGATGACAAGGGGAAAAGGAAGATGGGGCAAAGAAACAATGTGGAAATTGTGCATAAGATCACCAACACAATCAAAGGCCACTGGACTCCAGATGAGGACATGGTTCTCATCGAATCAGTGAGACGTTATGGGATTAAAAAATGGTCTTCCATCGCCCAATTACTAAATGGCAGGGTCGCAAAACAATGCAGAGAAAGATGGCTCAACCATTTACGGCCGAATATTAGGAAGGACTCATGGACTGAAGAAGAGGATAAAATACTCATTGAAGCTCACAAGGATATTGGAAACAAATGGGCAAAAATTGCAAAGAGATTATCTGGAAGAACTGAGAACACTGTCAAGAACCACTGGAATGCTACCAAACGACGCTTAAACGCGAAGAGGCGAGTGAATAAGCACATCGATCCAAAGGGAGAACTGCTTTTGAACTACATCAAGCAAGTTACTACAGCCATAGCTAAAAACGAATTGAAGAAACCCATCACCAATATCAACTTAAGGAGTGATAATCACAATGATCTCAACCTCCACCCGGTTTGGTATGAGAATAATATAGCTGATTGGAAATTGCATTCATATGCTCCTTCCATTAATGAAAATGATTGCTATGTTCCGGTGATGGTCAATGCTGGTGAAATAGCAAGTGGGTCTGTTATGGAAGATATATAG 1200 0.3992 MDFDPTFLDKLYDLPGVFSENTTNSKIPIMVPLQQNSTLLPPPSNNNLYSENNFHNFQHHHSFNMIQTNSSTSESYANWSQRNLVNSNYSTEFAPNNNKMEATHGYFNKCKGIWDSPREIPMPYDAISQPRVGPSLPPTLHVYESMVVNYRPQEKLSHITGAGNGCQETDQNIVIGDDKGKRKMGQRNNVEIVHKITNTIKGHWTPDEDMVLIESVRRYGIKKWSSIAQLLNGRVAKQCRERWLNHLRPNIRKDSWTEEEDKILIEAHKDIGNKWAKIAKRLSGRTENTVKNHWNATKRRLNAKRRVNKHIDPKGELLLNYIKQVTTAIAKNELKKPITNINLRSDNHNDLNLHPVWYENNIADWKLHSYAPSINENDCYVPVMVNAGEIASGSVMEDI* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0192 399 Pfam Myb-like DNA-binding domain 201 247 IPR001005 -
Lan8g0192 399 Pfam Myb-like DNA-binding domain 253 295 IPR001005 -
Lan8g0192 399 SMART sant 200 249 IPR001005 -
Lan8g0192 399 SMART sant 252 300 IPR001005 -
Lan8g0192 399 PANTHER MYB PROTEIN-RELATED 53 332 - -
Lan8g0192 399 CDD SANT 255 298 IPR001005 -
Lan8g0192 399 Gene3D - 200 252 - -
Lan8g0192 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 302 IPR017930 -
Lan8g0192 399 SUPERFAMILY Homeodomain-like 199 294 IPR009057 -
Lan8g0192 399 CDD SANT 204 247 IPR001005 -
Lan8g0192 399 ProSiteProfiles Myb-like domain profile. 248 298 IPR001005 -
Lan8g0192 399 ProSiteProfiles Myb-like domain profile. 201 247 IPR001005 -
Lan8g0192 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 247 IPR017930 -
Lan8g0192 399 Gene3D - 254 316 - -
Lan8g0192 399 PANTHER MYB DOMAIN PROTEIN 100-RELATED 53 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0192 Lan-Chr8 3246603 3249571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0192 195 325 MYB Transcription Factor Family AT4G18770 61.069 3.13e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan8g0192 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0192 K09422 - lang:109354158 803.897