Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0189 ATGTTGAGGCCGATGGTGCAGCCGATAGGGCAGAAGAGGCTAACAAATGTGGCAGTGGTGCGTCTCAAGAAGCATGGCATGCGATTTGAAATTGCCTGCTACCCAAACACTGTTCTTTCTTGGCGTTCCGGCGTGGAGAAGGACATTGATGAAGTGTTGCAGTCACATACTGTTTATTCTAATGTTTCGAAAGGGGTTCTTGCTAAGACAAAGGATTTGAATGCAGCTTTTGGGACTGATGACCAGTCCAAGATATGCTTAGAGATTTTAAAGAAAGGGGAGCTTCAGGTCGCTGGTAAAGAGAGGGAGTCTATCCTGTCGAGTCAGTTCAGGGATATTGCTACCATTGTGATGCAGAAGACCTACAATCCTGAGACTCAGCGCCCTTACACTATCAGTATGATTGAACGCCTCATGAGGGAAATTCATTTTGCTGTTGACCCAAATAGCACATCCAAGAAGCAGGCTCTGGAGTTGATTCAAGAGCTTCAAAAGCTTTTCCCAATAAAACGGTGTCCATTAAGAATACGAGTTGCAGCTCCTGAGGAGGAATTTGCTGCCCTTTTAGAGAAGCTGAATGAATGGAAGGCAAACATTGTTTCCAAAGAAGGATCTGCTGGTCAGCTATCTGTTGTTTTTGAATTGGAACCAAGTCTTTATAAGGATTGCCATGACTTTGTTATGAAGAACATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTTGATGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATGCCTGCTCCTCTGCCCAAAGAAACTCGTGAATCTGTGCTCGAACTGAATGATAAACTTCAAAAGCAGACAATTTCATCTACAAGTAGGCTTACTGAGGGACACCAACAAAAGCAAAACAAGTGCAACACATGCAATGTTTCTTTCGAAGACACAAAACTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGGAAGACAAGGCAACTCCCACCCCTTACTGAGGAAGAGTGCATTGCAGACATGGAATTAAGTGACTCAAAATCTGATCTGAAGGATTATTCATTTTGA 1080 0.4333 MLRPMVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKTKDLNAAFGTDDQSKICLEILKKGELQVAGKERESILSSQFRDIATIVMQKTYNPETQRPYTISMIERLMREIHFAVDPNSTSKKQALELIQELQKLFPIKRCPLRIRVAAPEEEFAALLEKLNEWKANIVSKEGSAGQLSVVFELEPSLYKDCHDFVMKNMHGRFEVLAHSLYVDGDTQVEQYNDYEDMPAPLPKETRESVLELNDKLQKQTISSTSRLTEGHQQKQNKCNTCNVSFEDTKLYREHHKSEWHKHNMKRKTRQLPPLTEEECIADMELSDSKSDLKDYSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0189 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Lan8g0189 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 233 IPR002140 GO:0042256
Lan8g0189 359 Gene3D - 174 251 - -
Lan8g0189 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Lan8g0189 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Lan8g0189 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Lan8g0189 359 SUPERFAMILY beta-beta-alpha zinc fingers 292 329 IPR036236 -
Lan8g0189 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Lan8g0189 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Lan8g0189 359 PANTHER BNAANNG06530D PROTEIN 3 359 - -
Lan8g0189 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 3 359 IPR039100 -
Lan8g0189 359 Gene3D - 2 96 IPR036786 -
Lan8g0189 359 Gene3D - 100 172 IPR037188 -
Lan8g0189 359 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0189 Lan-Chr8 3178108 3180957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0189 27 359 C2H2 Transcription Factor Family AT1G43860 57.971 2.16e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0189 K14574 - gmx:100797497 602.438