Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0175 ATGGCAACAACTTTGCTGAGAAAGGAACATGGTTTGAACCTTAAGGAGACTGAGCTTTGCCTTGGTTTGCCTGGTGGTGGGTCTGATGTGGAAATTCCAAGGGTCAATGGGAAGAGAGGCTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCCCTCAAAGGAAGAATTGAATGAGAATCTGAAGAATGTTTTAAAGGAGAAGACCCTCCTTAAGGACCCTGCCAAGCCACCTGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACTTGATGACACAAAAGGTTAGCAATGAGGATTGCAGTGAGAAGATAGGTTGTGGGGCTTTTGTTAAGGTTTCCATGGATGGTGCACCTTACCTACGCAAGGTGGACTTAACAATGTACAAATGCTACCAAGAATTAGCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACAGGAATGATAGACTTCATGAATGAGAGGAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCAATTGGGCTTGCGCCAAGAGCCATGGAAAAATGCAAACGCAGAAGCTGA 678 0.4543 MATTLLRKEHGLNLKETELCLGLPGGGSDVEIPRVNGKRGFSETVDLKLNLPSKEELNENLKNVLKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNLMTQKVSNEDCSEKIGCGAFVKVSMDGAPYLRKVDLTMYKCYQELADALAKMFSSFTTGMIDFMNERKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKRRS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0175 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 218 IPR003311 GO:0005634|GO:0006355
Lan8g0175 225 Pfam AUX/IAA family 35 216 IPR033389 -
Lan8g0175 225 ProSiteProfiles PB1 domain profile. 113 207 IPR000270 GO:0005515
Lan8g0175 225 SUPERFAMILY CAD & PB1 domains 108 206 - -
Lan8g0175 225 Gene3D - 110 219 - -
Lan8g0175 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 8 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0175 Lan-Chr8 2851180 2853804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0175 116 215 B3 DNA Binding Superfamily AT4G23980 35.000 2.02e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan8g0175 AUX_IAA 3.1e-76 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0175 K14484 - gmx:547949 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0175 8 2851180 2853804 Lan20g0811 20 7158838 7160498 LSH