Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0173 ATGACAAGTGAAATTGTGAAGGTACCGAGAGATAAGGCAAAGGTTTCACCACCCTTAACATGTATTTTATGTAATCAATTGTTCAGAAATGCCACCACTGTGATTGAATGTTTGCATACTTTTTGCAGAGAATGCATAGAGAAGAAGATAACAGATGAGAAAATAACACACTGTCCAGTATGCAATACAGACTGGGGTTGGTTTCCGCAGGATAAATTAAAAGCAGATCACAGACTGCAAGGTTTAAGGGACAGAATTTTCCCCTCGAAAGGAAAAAATGCTAAGGTACCTGAAAATTCACCTTCAGTTACATTGCCAACAAAACCAAAGGAGGGTTCTCTATCTTCACTGAAGGCTGAAGCAAGAAAAGCCAAAGCGGCTGCAAAAAAAGTTGTCACTCCGAGAGATGAAAAATGCGGTGGGATAGAAAATTTGGACAAAGTTTCTACAATTCTATCTGCAAGAAGAGCAAAAGTTGCAGCACGAAAAAAATTTATTCAGAGAGAATCCAGTCCTACTTGCCAACCTGACGAAGTAACCGGAGATGAAAAGGATGATGATGGCTATTCCCAGCTTCAAACTTCTAACGGAACTTCCAAATCCAGAGTCCAGAACACTTCAAAACCAGAACTCAGCAAACAAAAAGTGCCTAAGAAGAATTTAGAGGGCAGTACTGAGTTATGGAAAGATAAAGCTGAAATGTCTGAGCCATTAACTTTTCTGGTGGAAGCTGTAAGAAGAAATAAGTCAAGTAATAAGTCTCCTATGAAAGAAATTGCTGTCACTCCTGTGCCTGTGGACTCAAGTGACAGTGACTCTGAGGTGCCGAAGTTCCAAGTTAAGAAACATAGTCACACTGGTGGTAAGAGAGATTCAGACTCTACCAAACTCAGAAGGTTGCGGGACACTCAAGAAAGAACAGTTAAATTCTATGGGGACTTGAATCTTCCAGCACCAGCACCTGTGATTGGTTCTAGCACTGAAAGAAACAACAAATTTGGGAATCTTTCAGCACAACCTGTGATTGGTTCAAGTGGTAAAAGCGAAAAGATATTTGGCGGTCCAGTTTGGTTCTCCTTGGTTGCTTCTGAAGACAAGGAAGAAGGTGCAAGATTGCCTCAAATATCTTCATGTTTCATAAGAGTCAAGGATGGTAGTTTGCCTGTCTCATATATAGAAAAGTATATCGCGAAGAAGCTTGATCTTCCTAGTGATGCACAGGTGGAGATCTCATTATGGGGTCAGCCAGTTTTATCTTCATGGAAACTACAAAACTTAGTAGAAATGTGGTTGCAAACAATGCCGAAGGATGAGAAGATTCATACATCTGTTGGAAGCTCAGCTAAGGATTTTGTCATGGTCCTTTCATATGGACTATAG 1380 0.4043 MTSEIVKVPRDKAKVSPPLTCILCNQLFRNATTVIECLHTFCRECIEKKITDEKITHCPVCNTDWGWFPQDKLKADHRLQGLRDRIFPSKGKNAKVPENSPSVTLPTKPKEGSLSSLKAEARKAKAAAKKVVTPRDEKCGGIENLDKVSTILSARRAKVAARKKFIQRESSPTCQPDEVTGDEKDDDGYSQLQTSNGTSKSRVQNTSKPELSKQKVPKKNLEGSTELWKDKAEMSEPLTFLVEAVRRNKSSNKSPMKEIAVTPVPVDSSDSDSEVPKFQVKKHSHTGGKRDSDSTKLRRLRDTQERTVKFYGDLNLPAPAPVIGSSTERNNKFGNLSAQPVIGSSGKSEKIFGGPVWFSLVASEDKEEGARLPQISSCFIRVKDGSLPVSYIEKYIAKKLDLPSDAQVEISLWGQPVLSSWKLQNLVEMWLQTMPKDEKIHTSVGSSAKDFVMVLSYGL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0173 459 MobiDBLite consensus disorder prediction 248 298 - -
Lan8g0173 459 CDD RING-HC_PCGF 19 62 - -
Lan8g0173 459 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Lan8g0173 459 MobiDBLite consensus disorder prediction 274 298 - -
Lan8g0173 459 MobiDBLite consensus disorder prediction 89 116 - -
Lan8g0173 459 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
Lan8g0173 459 MobiDBLite consensus disorder prediction 163 228 - -
Lan8g0173 459 MobiDBLite consensus disorder prediction 190 211 - -
Lan8g0173 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 125 IPR013083 -
Lan8g0173 459 MobiDBLite consensus disorder prediction 95 111 - -
Lan8g0173 459 SUPERFAMILY RING/U-box 16 79 - -
Lan8g0173 459 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Lan8g0173 459 MobiDBLite consensus disorder prediction 212 228 - -
Lan8g0173 459 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 458 IPR044807 GO:0004842
Lan8g0173 459 SMART ring_2 21 61 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0173 Lan-Chr8 2816174 2820496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0173 5 383 C3H Transcription Factor Family AT2G30580 31.646 7.21e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0173 K16277 - jre:108989436 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0173 8 2816174 2820496 Lan20g0814 20 7223825 7228213 LSH