Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan8g0166 | ATGGGGCAATCGCAATCCAAGGACGATTTGCTCTTCCAGCAAGTCAATTATGGGAACATCGAAGGAATTAAAGCTCTTCATATACAAGGTGCAGGCCTTGAGTGGATGGACAGAGAAGGAAAGACACCTTTGATTGTTGCTTGTATGAATCCTGAGCTTTATAATGTTGCTAAAGCTTTGATCGAGCTTGGAGCCAATGTCAATGCATACCGTCCCGGTCGTCATGCTGGGACTCCATTGCATCACGCAGCTAAAAGGGGCCTTAAACGTACCGTTAAGTTACTTCTTTTACATGGAGCCAATGCTCTTGTCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCAAGGGCCAAAGGACACGCCAATGTTGTTCGTGCATTTGAGAGTCATTTATGCTTGTTCTCCGGTTGGCTGCGGGAGTTTCATGGACCTGGGTTCCTAGAAGTAGTAGCTCCTCATTTGGTATCTAGAAAAGTTTGGGTAGTTGTTTTACCAGCTGGTTCCCGTAATCTTACCAGACCATACAAGTTGGAGCTTGCAATATATTCTACTATGCAGGACTCACAACCACGTACCATTATTGCTTTGTGGAAAGCAAATTTAGAAGAACCGAAGCTTCACCAGTCTGATCCGTCTGTGACAATTGTTGATATCACTCACAAAACACGCTTCAAACTTGGCCCTGCAAATGAGAATGACAGGCAACAACTTACACGGTTTTCCAATGCTTGCAAAGGAATTCCACAGACAGACCCAGCATTTTTGCACAATAATGTGGCTACAGTTCCACCAACAGCACCACCGCCACCACCAGCTGCAGAAGACCCAGAGCTAGCTATGGCTATCCATGCATCCCTTCAGTATGCCATTAATGATAGGCCACCCTTCCCTGATGCCTATCCAAACTTTGACGCAAGCTCTTCAAGTGGAGTGAATAATACAAGCAAGCATGGCTATCTAGGTACAGAAAATCCAAATGCCAGTGAAAGTGTGACTGAACATGAAGCTGAGCAAGGTGGCAATAATCAGCATGTCCAAATCCACGACAACGACAATATCTCTGCTGTCCATACTACTACTGACCTCGATTTCAATCCATCAGCGCCTCCAATTACTAGCGAGATTCCAGTAGATGGCCCCATTCAATATCCGTCAATTGATTCAAGCCCCATCGATGTGTCATCTGAAGTCGTTGAGAGGCTACCTAAAGAAGAAGAAAATGCCGATGGAAATAGTTCTTCATGTGTGATATGCTTAGATGCTCCGGCAGAAGGGGCATGCGTACCTTGCGGCCATGTTGCTGGATGCATGGCTTGCTTGAATGAGGTCAAAAGAAAGAAGTGGGGTTGCCCAGTATGTAGAGTTAAAATAGACCAGGTCATAAAGCTCTATCATGTTTGA | 1404 | 0.4509 | MGQSQSKDDLLFQQVNYGNIEGIKALHIQGAGLEWMDREGKTPLIVACMNPELYNVAKALIELGANVNAYRPGRHAGTPLHHAAKRGLKRTVKLLLLHGANALVLNDDCQTALEVARAKGHANVVRAFESHLCLFSGWLREFHGPGFLEVVAPHLVSRKVWVVVLPAGSRNLTRPYKLELAIYSTMQDSQPRTIIALWKANLEEPKLHQSDPSVTIVDITHKTRFKLGPANENDRQQLTRFSNACKGIPQTDPAFLHNNVATVPPTAPPPPPAAEDPELAMAIHASLQYAINDRPPFPDAYPNFDASSSSGVNNTSKHGYLGTENPNASESVTEHEAEQGGNNQHVQIHDNDNISAVHTTTDLDFNPSAPPITSEIPVDGPIQYPSIDSSPIDVSSEVVERLPKEEENADGNSSSCVICLDAPAEGACVPCGHVAGCMACLNEVKRKKWGCPVCRVKIDQVIKLYHV* | 468 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan8g0166 | 467 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - | |
| Lan8g0166 | 467 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 | |
| Lan8g0166 | 467 | Gene3D | - | 79 | 132 | IPR036770 | - | |
| Lan8g0166 | 467 | Gene3D | - | 2 | 78 | IPR036770 | - | |
| Lan8g0166 | 467 | MobiDBLite | consensus disorder prediction | 298 | 346 | - | - | |
| Lan8g0166 | 467 | ProSiteProfiles | Zinc finger RING-type profile. | 416 | 455 | IPR001841 | - | |
| Lan8g0166 | 467 | MobiDBLite | consensus disorder prediction | 303 | 346 | - | - | |
| Lan8g0166 | 467 | SUPERFAMILY | RING/U-box | 415 | 461 | - | - | |
| Lan8g0166 | 467 | Pfam | Zinc finger, C3HC4 type (RING finger) | 414 | 461 | - | - | |
| Lan8g0166 | 467 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
| Lan8g0166 | 467 | SMART | ANK_2a | 108 | 137 | IPR002110 | GO:0005515 | |
| Lan8g0166 | 467 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
| Lan8g0166 | 467 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
| Lan8g0166 | 467 | Pfam | Ankyrin repeats (many copies) | 60 | 116 | IPR002110 | GO:0005515 | |
| Lan8g0166 | 467 | PANTHER | UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED | 1 | 467 | - | - | |
| Lan8g0166 | 467 | SUPERFAMILY | Ankyrin repeat | 8 | 133 | IPR036770 | - | |
| Lan8g0166 | 467 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
| Lan8g0166 | 467 | PANTHER | ROLLING PEBBLES, ISOFORM B | 1 | 467 | - | - | |
| Lan8g0166 | 467 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 399 | 467 | IPR013083 | - | |
| Lan8g0166 | 467 | SMART | ring_2 | 416 | 454 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan8g0166 | Lan-Chr8 | 2743151 | 2748536 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan8g0166 | 408 | 464 | C3H Transcription Factor Family | AT3G06140 | 29.825 | 8.95e-07 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan8g0166 | - | - | lang:109354249 | 914.835 |