Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0158 ATGGGTTCTGTTTGTGGTTGTTTCAGAGATGACGATTTTGAAGATTATATGAATCCAAGTAGTTCCGTGTATAGGAACTGCCCGTGTCTTGGTTGCTTCATGCAGAGCCTTTTGAATGTGTATGGATTGATATTCTGTAGAAGTGAAGTGCATGCAATTCCTTCATCTATAGAGGGAGCAGCATCTATGACTTCTACAGCATCAATTGATAATTCACTGTCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCCGGATTTTCCGCTCACAGAGTGATGGACTTGTTTCAAGACGTGACAAAGGTTCAAGTCATTCAAACGAGGAGTCAGAACCGCTTAGAAGTGATGTAGATGTGAATCCAGAATCTTTAAATTCGGGTGGCAAATGGAAGGATAGTGCCGGTGAAGATGCATCTAAGGTATACCGTTCTAAGTCCTCAATAAGACTTTCATCAGCAAAACTTACAACAGGAGCTGGGTTCGTCTATTCTTCATCAGAAGAGGAGGATGTTTGTCCAACTTGTCTTGAAGAATACACCGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACACTTGTCCAGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 684 0.4225 MGSVCGCFRDDDFEDYMNPSSSVYRNCPCLGCFMQSLLNVYGLIFCRSEVHAIPSSIEGAASMTSTASIDNSLSDMYRSPPRPLPYDADPRIFRSQSDGLVSRRDKGSSHSNEESEPLRSDVDVNPESLNSGGKWKDSAGEDASKVYRSKSSIRLSSAKLTTGAGFVYSSSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0158 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Lan8g0158 227 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Lan8g0158 227 SMART ring_2 177 217 IPR001841 -
Lan8g0158 227 SUPERFAMILY RING/U-box 172 224 - -
Lan8g0158 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Lan8g0158 227 MobiDBLite consensus disorder prediction 97 141 - -
Lan8g0158 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 224 IPR013083 -
Lan8g0158 227 MobiDBLite consensus disorder prediction 98 121 - -
Lan8g0158 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Lan8g0158 227 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0158 Lan-Chr8 2624595 2628945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0158 1 226 C3H Transcription Factor Family AT5G15790 58.009 1.19e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0158 - - gmx:100788192 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0109 9 1310341 1315541 Lan8g0158 8 2624595 2628945 LSH
Lan2g0105 2 909300 913420 Lan8g0158 8 2624595 2628945 LSH