Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0154 ATGGCTAGGTCTGGAATAGAGTATCAAGAAGAATTGGAAGAAGACGAAGAAGAAGGCCATTTCACTGGAAACAGTTCTTCCCCTCATAAAGTGAAGGTGGATGAACCCAATAGGGGCAAGAGGGTGAACCCTCATCGTTCCAAACATTCAGAGACAGAACAGCGTAGGAGGTGTAAGATTAATGAAAGATTTCAGGTTCTACGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAAGCTTCCTTCTTGTTGGAGGTTATTCAGTATATTCACTTTCTACAGGAAAAGCTACAAATTTATGAACAGTCTTATGAAGGGTGGAATCAGGAGCCAATGAAATTGATTCCATGGAGAAATCATAACGGGGCTGCAGAAAATAATACAGATCCTTCTCAAGCTTTACAAAATGGGTCTGCTTATGAGAAAAATGAAGGTGTCTCTATATCATTGCCCAGAAATATACAGAATCCGATAGAGTCTGACTTGTCAACGACCACTATTCAGAAAGGCTACACTCCGGGTTTAGCTACAGATGCAGTTTCCATGGGCATGCAAATGCAATTGGACATGTTTGATCCGGTTGTTAGCATTGGTATGCCAACGCAACATCTGCAGCAACCTGTTTCTAGTGCTGACATCCCTTCCCATAACCAGCCTCAAGTTTGGCCGAGTAAACCAAATAGGAGCAACTATGCCGTTCCGGATAATTCATTGAAGGAACAGGAGGAGCTGTCAATTGAAAGTGGATCTGAGAGCATCTCAAGTGCCTATTCTCAGGGAATATTAGATACTCTCAAGCAAGCGCTGCATTCTTCAGGAGTGGATTTATCCCAAGCTACTCTTTCAGTGCAAATAGATGTTGGTAGACAAGCAAAAACTGGGTTGACCCCCTTGGCGTCTGGCTTAAAGGGTCATGAAAAGCAGTTTGTGAACAATGAAGCAATGGCATATTCAGGAGTTGATTATTACAGTGAGGATTCTGAACAAAGCTTGAAGAGGCTGAGAAGAGAATGA 1017 0.4208 MARSGIEYQEELEEDEEEGHFTGNSSSPHKVKVDEPNRGKRVNPHRSKHSETEQRRRCKINERFQVLRDLIPQNDQKRDKASFLLEVIQYIHFLQEKLQIYEQSYEGWNQEPMKLIPWRNHNGAAENNTDPSQALQNGSAYEKNEGVSISLPRNIQNPIESDLSTTTIQKGYTPGLATDAVSMGMQMQLDMFDPVVSIGMPTQHLQQPVSSADIPSHNQPQVWPSKPNRSNYAVPDNSLKEQEELSIESGSESISSAYSQGILDTLKQALHSSGVDLSQATLSVQIDVGRQAKTGLTPLASGLKGHEKQFVNNEAMAYSGVDYYSEDSEQSLKRLRRE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0154 338 MobiDBLite consensus disorder prediction 1 56 - -
Lan8g0154 338 Coils Coil 91 111 - -
Lan8g0154 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 121 IPR036638 GO:0046983
Lan8g0154 338 MobiDBLite consensus disorder prediction 204 234 - -
Lan8g0154 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Lan8g0154 338 MobiDBLite consensus disorder prediction 31 56 - -
Lan8g0154 338 SMART finulus 50 100 IPR011598 GO:0046983
Lan8g0154 338 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 338 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lan8g0154 338 CDD bHLH_AtBIM_like 46 119 - -
Lan8g0154 338 Gene3D - 43 115 IPR036638 GO:0046983
Lan8g0154 338 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Lan8g0154 338 PANTHER TRANSCRIPTION FACTOR BIM3 5 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0154 Lan-Chr8 2583246 2588096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0154 3 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 41.558 3.73e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan8g0154 HLH 7.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0154 - - gmx:100791730 451.055