Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan8g0141 ATGTTGGAACATGACACTGCTAAGGCCATCAGAACTGTTGCATGCAGTAACTGGGCGCCTCGCATGTGCGACACATGTCGTGCTGCGACATGCACCGTGTTCTGCCGCGTGGACTCTGCGTACCTGTGCGCAGGATGCGACGCAAGAGTCCACACAGTGAACCACGTGGCGTCGCAGCACGAACGCGTGTGGGTGTGCGAGGCATGCGAGCGCGCCCCTGCAGAGTTCCTCTGCAAGGCGGACGCAGCCTCGTTGTGTTCCTCTTGTGACTCTGACATCCACTCTGCTAACCTTCTCGCCAGCCGCCACCACCGCGTGCCGATCATGCCCATCTCAGGGTTCCTCTACGGCCCTCCGGCTACTCAAGAGGGTGGGTTTGTGAGTGGTCGGGGTTGCGGTGGTGGTTGTGGCAGTGAGGTTGAGATGGATGAAGAAGAAGATGGTGTCGGTGTGGAAGATGAAGATGAAGCAGCTTCATGGCTCTTACTGAATCCTATGAAGAACAACAACATCAGCAGCAACAATGAGCAGAGTAATGGATTCTTGTTTGGTGGGGAAGTTGATGAGTACTTGGACCTTGTTGATTGTAATTCTTGTGATGGCAACAACAACAACAACAACCAGTTCAATTCTGGTACTGAACATTATGTTCAGCAGAACCAGCATCAACAACAACATTATGGTGTTCCTCAGAAAAGCTATGCTGGGGACAGTGTTGTTCCAGTTCAGCAACACCAGCAAGGACATCATTTTCAACTTGGGTTGGAGTTTGAATCACCCAAAGCTGGATTTAGTTACAATGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATAGATGTTGGTATTGTACCAGAATCAACCATGAGGGATGTCTCAATTTCTCATTCTAGGCCTCCAAAAGGGACAATTGACCTATTTTCGGGACCTTCCATTCAGATTCCTTGCCATCTTACTCCAATGGACAGAGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAAACAATCCGGTATGCCTCAAGGAAGGCCTATGCCGAGACCCGACCTCGCATAAAAGGTCGATTTGCCAAGAGATCGAATGCCGAAGCCGAAGTGGAACAGATGTTCTCCTCGTCACTAATTACAGAGGTTGGATATGGCATTGTTCCCTCTTTCTGA 1179 0.4919 MLEHDTAKAIRTVACSNWAPRMCDTCRAATCTVFCRVDSAYLCAGCDARVHTVNHVASQHERVWVCEACERAPAEFLCKADAASLCSSCDSDIHSANLLASRHHRVPIMPISGFLYGPPATQEGGFVSGRGCGGGCGSEVEMDEEEDGVGVEDEDEAASWLLLNPMKNNNISSNNEQSNGFLFGGEVDEYLDLVDCNSCDGNNNNNNQFNSGTEHYVQQNQHQQQHYGVPQKSYAGDSVVPVQQHQQGHHFQLGLEFESPKAGFSYNGSISQSVSVSSIDVGIVPESTMRDVSISHSRPPKGTIDLFSGPSIQIPCHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRSNAEAEVEQMFSSSLITEVGYGIVPSF* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan8g0141 392 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Lan8g0141 392 Pfam CCT motif 323 365 IPR010402 GO:0005515
Lan8g0141 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 392 IPR045281 GO:0009909
Lan8g0141 392 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Lan8g0141 392 SMART bboxneu5 66 108 IPR000315 GO:0008270
Lan8g0141 392 SMART bboxneu5 18 65 IPR000315 GO:0008270
Lan8g0141 392 CDD Bbox1_BBX-like 65 108 - -
Lan8g0141 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 18 392 - -
Lan8g0141 392 CDD Bbox1_BBX-like 23 65 - -
Lan8g0141 392 ProSiteProfiles CCT domain profile. 323 365 IPR010402 GO:0005515
Lan8g0141 392 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan8g0141 Lan-Chr8 2372060 2374912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan8g0141 18 392 C2C2-CO-like Transcription Factor Family AT3G02380 52.821 1.03e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan8g0141 zf-B_box 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan8g0141 - - zju:107405905 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0092 9 737470 739835 Lan8g0141 8 2372060 2374912 LSH
Lan20g1344 20 20118710 20122437 Lan8g0141 8 2372060 2374912 PCT
Lan8g0141 8 2372060 2374912 Lan20g1344 20 20118710 20122437 PCT